Genome Biology

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Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression

Shisong Ma and Hans J Bohnert*

Genome Biology 2007, 8:R49 doi:10.1186/gb-2007-8-4-r49

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Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms

Dennis Janz, Katja Behnke, Jörg-Peter Schnitzler, Basem Kanawati, Philippe Schmitt-Kopplin, Andrea Polle BMC Plant Biology 2010, 10:150 (17 July 2010)

Research article   Open Access

The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants

Pinja Jaspers, Kirk Overmyer, Michael Wrzaczek, Julia P Vainonen, Tiina Blomster, Jarkko Salojärvi, Ramesha A Reddy, Jaakko Kangasjärvi BMC Genomics 2010, 11:170 (12 March 2010)

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Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

Kil-Young Yun, Myoung Park, Bijayalaxmi Mohanty, Venura Herath, Fuyu Xu, Ramil Mauleon, Edward Wijaya, Vladimir B Bajic, Richard Bruskiewich, Benildo G de los Reyes BMC Plant Biology 2010, 10:16 (25 January 2010)

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Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

Javier Carrera, Guillermo Rodrigo, Alfonso Jaramillo, Santiago F Elena Genome Biology 2009, 10:R96 (15 September 2009)

An Arabidopsis thaliana transcriptional network reveals regulatory mechanisms for the control of genes related to stress adaptation.

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Regulon organization of Arabidopsis

Wieslawa I Mentzen, Eve Wurtele BMC Plant Biology 2008, 8:99 (30 September 2008)

In response to environmental and other experimental perturbations, the Arabidopsis transcriptome shows 998 regulons of co-expressed genes, corresponding to many known biological processes but also including many unannotated genes.

Research article   Open Access

Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana

Sowmya S Krishnaswamy, Sanjeeva Srivastava, Mohsen Mohammadi, Muhammad H Rahman, Michael K Deyholos, Nat NV Kav BMC Plant Biology 2008, 8:91 (10 September 2008)

Methodology article   Open Access Highly Accessed

EDISA: extracting biclusters from multiple time-series of gene expression profiles

Jochen Supper, Martin Strauch, Dierk Wanke, Klaus Harter, Andreas Zell BMC Bioinformatics 2007, 8:334 (12 September 2007)