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Selected common stress response genes |
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| Affymetrix probe |
AGI |
Annotation |
Membership value |
|
|
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| 257053_at |
At3g15210 |
ATERF-4 |
0.273508 |
| 261470_at |
At1g28370 |
ERF/AP2 transcription factor |
0.162002 |
| 248799_at |
At5g47230 |
ATERF-5 |
0.086731 |
| 252214_at* |
At3g50260 |
ERF/AP2 transcription factor |
0.083494 |
| 245250_at |
At4g17490 |
ATERF-6 |
0.063712 |
| 248448_at |
At5g51190 |
ERF/AP2 transcription factor |
0.044611 |
| 254926_at |
At4g11280 |
ACS6 |
0.109595 |
| 266832_at |
At2g30040 |
MAPKKK14 |
0.054407 |
| 245731_at |
At1g73500 |
ATMKK9 |
0.165439 |
| 254924_at |
At4g11330 |
ATMPK5 |
0.060749 |
|
|
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| 247033_at |
At5g67250 |
SKIP2 |
0.052666 |
| 255872_at |
At2g30360 |
CIPK11 |
0.093386 |
| 261648_at |
At1g27730 |
ZAT10 |
0.458157 |
| 257022_at |
At3g19580 |
AZF2 |
0.194905 |
|
|
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| 248833_at |
At5g47120 |
Bax inhibitor-1, AtBI-1 |
0.048683 |
|
|
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| 246453_at |
At5g16830 |
SYP21 |
0.089816 |
| 254422_at |
At4g21560 |
VPS28 family protein |
0.081642 |
| 264655_at |
At1g09070 |
SRC2 |
0.119115 |
| 256238_at |
At3g12400 |
tumour susceptibility gene 101 (TSG101) family protein |
0.051677 |
| 265375_at |
At2g06530 |
SNF7 family protein |
0.125775 |
| 262367_at* |
At1g73030 |
SNF7 family protein |
0.037115 |
| 247204_at |
At5g64990 |
Ras-related GTP-binding protein, putative |
0.048757 |
|
|
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| 260915_at |
At1g02660 |
lipase class 3 family protein |
0.100258 |
| 254707_at |
At4g18010 |
inositol polyphosphate 5-phosphatase II (IP5PII) |
0.056767 |
| 251336_at |
At3g61190 |
BON1-associated protein 1 (BAP1) |
0.152337 |
| 262540_at |
At1g34260 |
phosphatidylinositol-4-phosphate 5-kinase family protein |
0.054866 |
|
|
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| 247431_at* |
At5g62520 |
SRO5, similarity to RCD1 but without the WWE domain |
0.048374 |
| 247655_at |
At5g59820 |
zinc finger protein ZAT12 |
0.286685 |
|
|
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| 259879_at* |
At1g76650 |
calcium-binding EF hand family protein |
0.09479 |
| 266371_at |
At2g41410 |
putative calmodulin |
0.072498 |
| 259137_at |
At3g10300 |
calcium-binding EF hand family protein |
0.06951 |
| 247426_at |
At5g62570 |
calmodulin-binding protein |
0.068879 |
| 247137_at |
At5g66210 |
CPK28, calcium-dependent protein kinase |
0.067785 |
| 251636_at |
At3g57530 |
CPK32, calcium-dependent protein kinase |
0.06706 |
| 253284_at |
At4g34150 |
C2 domain-containing protein |
0.056923 |
| 253915_at |
At4g27280 |
calcium-binding EF hand family protein |
0.051136 |
| 265460_at |
At2g46600 |
calcium-binding protein, putative |
0.038761 |
|
|
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| 249928_at |
At5g22250 |
similar CCR4-NOT transcription complex, subunit 7, CAF1 |
0.136686 |
| 248146_at |
At5g54940 |
eukaryotic translation initiation factor SUI1 |
0.090271 |
| 256356_s_at |
At1g66500 |
similar to Pre-mRNA cleavage complex II protein Pcf11 |
0.102701 |
| 255742_at |
At1g25560 |
AP2 domain-containing transcription factor |
0.039118 |
| 245247_at |
At4g17230 |
scarecrow-like transcription factor 13, SCL13 |
0.251161 |
| 246987_at |
At5g67300 |
myb family transcription factor |
0.096819 |
| 265359_at |
At2g16720 |
myb family transcription factor, MYB7 |
0.068213 |
| 246253_at* |
At4g37260 |
myb family transcription factor, MYB73 |
0.046837 |
| 253219_at |
At4g34990 |
myb family transcription factor, MYB32 |
0.03538 |
| 247351_at |
At5g63790 |
no apical meristem (NAM) family protein |
0.159799 |
| 252278_at |
At3g49530 |
no apical meristem (NAM) family protein |
0.127213 |
| 249746_at |
At5g24590 |
turnip crinkle virus-interacting protein, with NAM domain |
0.087334 |
| 261892_at |
At1g80840 |
WRKY family transcription factor, WRKY40 |
0.186156 |
| 267028_at |
At2g38470 |
WRKY family transcription factor, WRKY33 |
0.122218 |
| 267246_at |
At2g30250 |
WRKY family transcription factor, WRKY25 |
0.069374 |
| 253535_at* |
At4g31550 |
WRKY family transcription factor, WRKY11 |
0.039245 |
| 253485_at |
At4g31800 |
WRKY family transcription factor, WRKY18 |
0.037623 |
| 247509_at |
At5g62020 |
Heat Stress Transcription Factor, At-HSFB2A |
0.110848 |
| 254592_at* |
At4g18880 |
Heat Stress Transcription Factor, At-HSFA4A |
0.084085 |
| 259992_at* |
At1g67970 |
Heat Stress Transcription Factor, At-HSFA8 |
0.069577 |
|
|
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| 255259_at |
At4g05020 |
NADH dehydrogenase-related |
0.089839 |
| 254120_at |
At4g24570 |
mitochondrial substrate carrier family protein |
0.111919 |
| 250335_at |
At5g11650 |
hydrolase, alpha/beta fold family protein |
0.111254 |
| 252131_at |
At3g50930 |
AAA-type ATPase family protein |
0.105058 |
| 250062_at |
At5g17760 |
AAA-type ATPase family protein |
0.052915 |
| 265450_at* |
At2g46620 |
AAA-type ATPase family protein |
0.05194 |
| 253323_at |
At4g33920 |
PP2c familiy protein |
0.10342 |
| 253824_at |
At4g27940 |
mitochondrial substrate carrier family protein |
0.075698 |
| 246870_at |
At5g26030 |
ferrochelatase I |
0.089846 |
| 264000_at |
At2g22500 |
mitochondrial substrate carrier family protein |
0.308636 |
| 246779_at |
At5g27520 |
mitochondrial substrate carrier family protein |
0.077536 |
| 251757_at |
At3g55640 |
mitochondrial substrate carrier family protein |
0.040783 |
|
|
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| 260345_at* |
At1g69270 |
leucine-reich repreat family protein, RPK1 |
0.061161 |
| 248964_at |
At5g45340 |
P450 CYP707A3 |
0.050208 |
|
|
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| 253203_at |
At4g34710 |
arginine decarboxylase, ADC2 |
0.099102 |
|
|
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| 258207_at |
At3g14050 |
RelA/Spot protein, RSH2 |
0.177302 |
|
|
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| 250676_at |
At5g06320 |
harpin-induced family protein, NHL3 |
0.119862 |
| 259826_at |
At1g29340 |
PUB17, an E3 ubiquitin ligase |
0.069476 |
| 267411_at |
At2g34930 |
disease resistance family protein, similar to Cf-2.1 |
0.043403 |
| 245986_at* |
At5g13160 |
protein kinase PBS1 |
0.06912 |
|
Included are genes from the common stress response cluster N12. Membership indicates the probe membership value associated with centroid N12. Asterisks identify genes that are significantly regulated in all but one treatment condition (see results). | |||
Ma and Bohnert Genome Biology 2007 8:R49 doi:10.1186/gb-2007-8-4-r49 |
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