Table 1 |
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|
Duplicate pairs with asymmetric expression evolution |
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| Conserved* |
Divergent* |
Ortholog* |
EC1† |
EC2† |
AA1‡ |
AA2‡ |
|
|
||||||
| URA7 |
URA8 |
orf19.3941 |
0.83877 |
-0.70319 |
19 |
12 |
| YML125C |
YML087C |
orf19.7307 |
0.78458 |
-0.67655 |
31 |
5 |
| YGR141W |
YPR157W |
orf19.1800 |
0.71756 |
-0.65682 |
11 |
15 |
| URA5 |
URA10 |
orf19.2555 |
0.65222 |
-0.62355 |
14 |
2 |
| SEC14 |
YKL091C |
orf19.941 |
0.56525 |
-0.57108 |
30 |
3 |
| YDR018C |
YBR042C |
orf19.137 |
0.63182 |
-0.55743 |
6 |
26 |
| UTH1 |
NCA3 |
orf19.5032 |
0.6716 |
-0.53582 |
25 |
8 |
| MRS3 |
MRS4 |
orf19.2178 |
0.59171 |
-0.5275 |
3 |
3 |
| YDR341C |
MSR1 |
orf19.3341 |
0.86239 |
-0.49736 |
31 |
2 |
| SVL3 |
PAM1 |
orf19.1139 |
0.51523 |
-0.48769 |
32 |
21 |
| YGL060W |
YBR216C |
orf19.5034 |
0.53514 |
-0.43043 |
28 |
26 |
| YKL035W |
YHL012W |
orf19.1738 |
0.55403 |
-0.41198 |
178 |
1 |
| FKS1 |
GSC2 |
orf19.2929 |
0.53428 |
-0.40078 |
24 |
17 |
| APA1 |
APA2 |
orf19.5630 |
0.71784 |
-0.38482 |
7 |
9 |
| YOR054C |
SIS2 |
orf19.7378 |
0.59512 |
-0.38274 |
13 |
12 |
| EGD1 |
BTT1 |
orf19.1154 |
0.80319 |
-0.35655 |
18 |
3 |
| PRK1 |
YNL020C |
orf19.2605 |
0.56058 |
-0.3195 |
14 |
14 |
| YOR227W |
YPL137C |
orf19.6544 |
0.66576 |
-0.28599 |
31 |
41 |
| GSP1 |
GSP2 |
orf19.5493 |
0.70457 |
-0.26817 |
1 |
0 |
| YBL054W |
YER088C |
orf19.2545 |
0.78265 |
-0.25468 |
9 |
19 |
| EMP70 |
YDR107C |
orf19.2746 |
0.44981 |
-0.22268 |
32 |
13 |
| YDR185C |
MSF1' |
orf19.3089 |
0.72298 |
-0.21596 |
3 |
19 |
| GZF3 |
DAL80 |
orf19.2842 |
0.59906 |
-0.20028 |
3 |
2 |
| YEL006W |
YIL006W |
orf19.1393 |
0.6866 |
-0.16477 |
5 |
28 |
| ARE2 |
ARE1 |
orf19.2248 |
0.82595 |
-0.13257 |
39 |
10 |
| YMR102C |
YKL121W |
orf19.7235 |
0.59001 |
-0.12411 |
21 |
6 |
| YIL036W |
YER045C |
orf19.6102 |
0.60972 |
-0.08006 |
8 |
2 |
| YJL084C |
YKR021W |
orf19.5605 |
0.57884 |
-0.0794 |
43 |
26 |
| YOR108W |
LEU4 |
orf19.6086 |
0.80251 |
-0.04464 |
6 |
16 |
| YKR027W |
CHS6 |
orf19.5155 |
0.54734 |
-0.03258 |
9 |
17 |
| YHR149C |
YGR221C |
orf19.1426 |
0.65 |
0.010312 |
27 |
15 |
| YGL133W |
YPL216W |
orf19.5510 |
0.67582 |
0.050333 |
33 |
11 |
| YER119C |
YBL089W |
orf19.1210 |
0.84012 |
0.06238 |
22 |
14 |
| RSC6 |
SNF12 |
orf19.2265 |
0.68101 |
0.068833 |
13 |
31 |
| HXK2 |
HXK1 |
orf19.542 |
0.71034 |
0.10264 |
18 |
9 |
| YLL010C |
YLR019W |
orf19.5406 |
0.82661 |
0.11215 |
13 |
8 |
| AAP1' |
APE2 |
orf19.5197 |
0.59717 |
0.14552 |
7 |
11 |
| YGL144C |
YDL109C |
orf19.3991 |
0.82365 |
0.17816 |
41 |
21 |
| PMT2 |
PMT3 |
orf19.6812 |
0.75012 |
0.26011 |
57 |
10 |
| NHP6A |
YBR089CA |
orf19.4623.3 |
0.78273 |
0.3078 |
1 |
0 |
| MKK2 |
MKK1 |
orf19.6889 |
0.77227 |
0.31153 |
7 |
10 |
| YBR238C |
YGL107C |
orf19.7459 |
0.69723 |
0.40045 |
2 |
0 |
| CDC19 |
PYK2 |
orf19.3575 |
0.81763 |
0.4044 |
56 |
12 |
|
|
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|
*'Conserved' and 'Divergent' refer to the duplicates from S. cerevisiae with high and low expression similarity to the ortholog from C. albicans, respectively. †Expression conservation between the conserved (EC1) and divergent (EC2) copies and their reconstructed ancestor. ‡Number of amino acid substitutions between the conserved (AA1) and divergent (AA2) copies and their reconstructed ancestor. |
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|
Tirosh and Barkai Genome Biology 2007 8:R50 doi:10.1186/gb-2007-8-4-r50 |
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