|
Co-ortholog nomenclature and genomic locations in the Fugu genome |
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| Human gene* |
Co-ortholog name† |
Fugu scaffold (S) location (kb)‡ |
Length (kb)§ |
Prop 'N's (%)¶ |
Fugu protein accession code¥ |
|
|
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| BCL11A |
bcl11a.1 |
S113: 140.8-518.9 |
378.1 |
2.98 |
NEWSINFRUP00000142044 |
| bcl11a.2 |
S62: 603.7-740.4 |
136.7 |
0.18 |
NEWSINFRUP00000144873 |
|
| EBF1 |
ebf1.1 |
S97: 400.4-483.3 |
82.9 |
0.82 |
NEWSINFRUP00000127762 |
| ebf1.2 |
S71: 999.3-1,091.7 |
92.4 |
1.90 |
NEWSINFRUP00000148373 |
|
| FIGN |
fign.1 |
S36: 382.6-486.8 |
104.2 |
0.16 |
NEWSINFRUP00000153680 |
| fign.2 |
S46: 126.9-219.9 |
93 |
0.39 |
NEWSINFRUP00000177971 |
|
| PAX2 |
pax2.1 |
S86: 541.7-669.8 |
128.1 |
0.29 |
- |
| pax2.2 |
S59: 768.9-898.3 |
132.7 |
3.59 |
- |
|
| SOX1 |
sox1.1 |
S42: 1,020-1,105 |
85 |
1.49 |
[Swiss-Prot: Q6WNU3_FUGRU] |
| sox1.2 |
S313: 107.2-174.9 |
67.7 |
8.9 |
[Swiss-Prot: Q6WNU2_FUGRU] |
|
| UNC4.1 |
unc4.1.1 |
S15: 761.1-825.5 |
61 |
0.32 |
NEWSINFRUP00000154395 |
| unc4.1.2 |
S40: 1,435-1,537 |
102 |
0.96 |
NEWSINFRUG00000161008 |
|
| ZNF503 |
znf503.1 |
S86: 7-220 |
213 |
3.64 |
NEWSINFRUP00000181530 |
| znf503.2 |
S59, S29 (all) |
148.5 |
3.22 |
NEWSINFRUP00000181454 |
|
|
*Name of human gene ortholog. †Nomenclature of novel Fugu co-orthologs. ‡Location and extent of Fugu genomic scaffold used in multiple alignment. §Length of Fugu genomic region used in multiple alignment. ¶Proportion of Fugu genomic region that is made up of unfinished sequence (that is, runs of 'N's). ¥The protein accession code for each co-ortholog. These were derived either from Ensembl (v40.4b) or from SwissProt. Protein sequences for pax2.1 and pax2.2 were incomplete in both Ensembl and SwissProt and were reconstructed using alignments of full-length amino acid sequences from other species. | |||||
Woolfe and Elgar Genome Biology 2007 8:R53 doi:10.1186/gb-2007-8-4-r53 |
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