Genome Biology

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A major zebrafish polymorphism resource for genetic mapping

Kevin M Bradley1, J Bradford Elmore1, Joan P Breyer1, Brian L Yaspan2,3, Jason R Jessen1, Ela W Knapik1 and Jeffrey R Smith1,2,3,4*

Author Affiliations

1 Department of Medicine, Vanderbilt University School of Medicine, Garland Avenue, Nashville, TN 37232-0275, USA

2 Department of Cancer Biology, Vanderbilt University School of Medicine, Garland Avenue, Nashville, TN 37232-0275, USA

3 Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Garland Avenue, Nashville, TN 37232-0275, USA

4 Medical Research Service, VA Tennessee Valley Healthcare System, Nashville, TN 37212, USA

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Genome Biology 2007, 8:R55 doi:10.1186/gb-2007-8-4-r55

Published: 11 April 2007

Additional files

Additional data file 1:

SNP positions within the Zv6 sequence assembly (chromosome-base number) are provided. Where not present in the Zv6 assembly, a single asterisk indicates SNP position within the Zv5 assembly or a double asterisk indicates SNP position within the Zv4 assembly.

Format: EPS Size: 58.5MB Download file

Open Data

Additional data file 2:

Proportions of single nucleotide variants observed in D. rerio sequence, categorized by assigned confidence score and by substitution type

Format: XLS Size: 21KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional data file 3:

A five-part table (a-e) in text file format amenable to database import

Format: ZIP Size: 17.9MB Download file

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Additional data file 4:

Designed genotyping assays for validated SNPs

Format: XLS Size: 214KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 5:

Zv5 repetitive sequences

Format: ZIP Size: 79.3MB Download file

Open Data