A major zebrafish polymorphism resource for genetic mapping

Kevin M Bradley¹ , J Bradford Elmore¹ , Joan P Breyer¹ , Brian L Yaspan²^,3 , Jason R Jessen¹ , Ela W Knapik¹ and Jeffrey R Smith¹^,2^,3^,4

¹Department of Medicine, Vanderbilt University School of Medicine, Garland Avenue, Nashville, TN 37232-0275, USA

²Department of Cancer Biology, Vanderbilt University School of Medicine, Garland Avenue, Nashville, TN 37232-0275, USA

³Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Garland Avenue, Nashville, TN 37232-0275, USA

⁴Medical Research Service, VA Tennessee Valley Healthcare System, Nashville, TN 37212, USA

author email corresponding author email

Genome Biology 2007, 8:R55doi:10.1186/gb-2007-8-4-r55


Published:	11 April 2007

Subject areas: Genome studies, Model organisms, Methods

Additional files

Additional data file 1:

SNP positions within the Zv6 sequence assembly (chromosome-base number) are provided. Where not present in the Zv6 assembly, a single asterisk indicates SNP position within the Zv5 assembly or a double asterisk indicates SNP position within the Zv4 assembly.

Format: EPS Size: 59.9MB Download file

Additional data file 2:

Proportions of single nucleotide variants observed in D. rerio sequence, categorized by assigned confidence score and by substitution type

Format: XLS Size: 21KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 3:

A five-part table (a-e) in text file format amenable to database import

Format: ZIP Size: 18.3MB Download file

Additional data file 4:

Designed genotyping assays for validated SNPs

Format: XLS Size: 214KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 5:

Zv5 repetitive sequences

Format: ZIP Size: 81.2MB Download file