|
Adjacent base context of unique finished sequence and candidate SNP sites in D. Rerio |
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| Flank motif |
DNA sites |
C/T SNPs |
A/G SNPs |
A/T SNPs |
G/T SNPs |
A/C SNPs |
C/G SNPs |
|
|
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| 5'T-N-A3' |
10.1% |
15.2% |
15.1% |
16.5% |
13.4% |
13.3% |
10.7% |
| A-N-A |
11.9% |
9.8% |
9.7% |
13.0% |
7.9% |
19.9% |
12.8% |
| T-N-T |
11.9% |
9.5% |
9.9% |
12.9% |
19.8% |
7.8% |
12.8% |
| A-N-T |
9.9% |
7.4% |
7.5% |
13.0% |
8.5% |
8.4% |
9.9% |
| A-N-G |
5.3% |
7.4% |
5.7% |
4.6% |
5.4% |
4.1% |
3.9% |
| T-N-C |
5.5% |
6.0% |
4.9% |
3.7% |
4.7% |
4.2% |
7.1% |
| T-N-G |
4.9% |
5.9% |
5.6% |
5.1% |
7.4% |
2.4% |
3.5% |
| C-N-T |
5.3% |
5.7% |
7.2% |
4.9% |
4.2% |
5.4% |
3.3% |
| C-N-A |
4.9% |
5.5% |
5.9% |
5.1% |
2.4% |
7.4% |
3.6% |
| G-N-A |
5.5% |
4.9% |
6.0% |
3.6% |
4.1% |
4.8% |
7.3% |
| G-N-G |
3.5% |
4.6% |
2.9% |
2.6% |
4.7% |
1.9% |
2.6% |
| G-N-T |
5.3% |
4.6% |
3.7% |
3.1% |
6.6% |
3.2% |
6.4% |
| C-N-G |
3.9% |
4.4% |
4.3% |
4.8% |
3.7% |
3.5% |
1.9% |
| A-N-C |
5.3% |
3.6% |
4.6% |
3.1% |
3.4% |
6.7% |
6.1% |
| C-N-C |
3.5% |
2.9% |
4.5% |
2.7% |
1.7% |
4.9% |
2.8% |
| G-N-C |
3.2% |
2.7% |
2.6% |
1.5% |
2.2% |
2.1% |
5.2% |
| N = 457,748,448 |
N = 141,416 |
N = 141,168 |
N = 111,434 |
N = 62,017 |
N = 62,220 |
N = 30,253 |
|
Bradley et al. Genome Biology 2007 8:R55 doi:10.1186/gb-2007-8-4-r55 |
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