Research
Ancient papillomavirus-host co-speciation in Felidae
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* Corresponding author: Marc Van Ranst marc.vanranst@uz.kuleuven.be
1 Laboratory of Clinical & Epidemiological Virology, Rega Institute for Medical Research, University of Leuven, Minderbroedersstraat, B3000 Leuven, Belgium
2 Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
3 Department of Experimental Virology, Institute of Hematology and Blood Transfusion, U Nemocnice, 128 22 Prague, Czech Republic
4 The Brown Cancer Center, University of Louisville, South Jackson Street, Louisville, KY 40202, USA
5 Department of Epidemiology and Social Medicine, Comprehensive Cancer Center, Albert Einstein College of Medicine, Morris Park Avenue, Bronx, NY 10461, USA
6 Basic Research Program-SAIC Frederick-National Cancer Institute, Building 560, Frederick, MD 21702-1201, USA
7 National Zoological Park, Smithsonian Conservation and Research Center, Remount Road, Front Royal, VA 22630, USA
8 East Wakefield Drive, Alexandria, Virginia 22307, USA
9 Phoenix Zoo, Galvin Parkway, Phoenix, AZ 85008, USA
10 The Jackson Laboratory, Main Street, Bar Harbor, MA 04609-1500, USA
Genome Biology 2007, 8:R57 doi:10.1186/gb-2007-8-4-r57
Published: 12 April 2007Additional files
Additional data file 1:
Table indicating the nucleotide position of the start of the ORF, start codon, and stop codon, the nucleotide and amino acid count of the ORFs and the predicted proteins respectively, and the predicted molecular weight of the putative proteins, for the different ORFs of the feline PVs LrPV1, PcPV1, PlpPV1, UuPV1, and FdPV1.
Format: DOC Size: 86KB Download file
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Additional data file 2:
Table indicating the percentages nucleotide and amino acid similarity of different ORFs of the feline PVs mutually and with the corresponding ORFs of COPV, HPV1, HPV5, HPV16, and BPV1.
Format: DOC Size: 72KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional data file 3:
Nucleotide sequence alignment of the NCR2 of the feline PVs LrPV1, PcPV1, PlpPV1, UuPV1, and FdPV1, from the stop codon of E2 to the start codon of L2. Nucleotides are shaded according to the degree of conservation (black = 100% conserved; dark gray = 80% to 99% conserved; light gray = 60% to 79% conserved; no shade = <60% conserved).
Format: EPS Size: 9.6MB Download file
Additional data file 4:
Concatenated alignment of the E6, E7, E1, E2, L2, and L1 ORFs of the members of the genus λ-PV, used for phylogenetic reconstruction and calculation of evolutionary rates.
Format: NEX Size: 54KB Download file
Additional data file 5:
Alignment of the URR (NCR1) of the feline PVs, used for calculation of the URR evolutionary rate.
Format: NEX Size: 3KB Download file