|
Overview of innate immunity components present or absent in selected Cnidaria |
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| Anthozoa |
Hydrozoa |
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|
|
|
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| Nematostella |
Acropora |
Hydra |
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|
|
|
|
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| Accession no. |
e-value |
Accession no. |
e-value |
Accession no. |
e-value |
||||
|
|
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| TLR pathway |
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| LBP |
+ |
gnl|ti|1139929806 |
7e-51 |
ND |
+ |
gb|DT619160 |
2e-13 |
||
| CD14 |
- |
ND |
- |
||||||
| TLR |
+ |
gnl|ti|573160901 gnl|ti|566578628 gnl|ti|558319530 gnl|ti|567085258 gnl|ti|581064934 |
1e-47 |
+ |
gb|EF090256 |
2e-7 |
- |
||
| MyD88 |
+ |
gnl|ti|1139972660 |
4e-26 |
ND |
+ |
gb|CV182656 |
1e-18 |
||
| IRAK |
+ |
gnl|ti|1146119691 |
3e-14 |
ND |
+ |
gb|DT608600 |
2e-10 |
||
| TRAF6 |
+ |
gnl|ti|1135509399 |
2e-51 |
+ |
gb|DY583189 |
1e-38 |
+ |
gb|CV985667 |
3e-41 |
| TAK1 |
+ |
gnl|ti|1135635219 |
1e-51 |
+ |
gb|DY583694 |
8e-119 |
+ |
gb|DN812953 |
1e-45 |
| IκK |
+ |
gnl|ti|1135636054 |
5e-68 |
ND |
+ |
gb|CV985420 |
2e-60 |
||
| NF-κB |
+ |
gnl|ti|1139960940 |
1e-74 |
+ |
gb|DY582971 |
3e-36 |
- |
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| IFN pathway |
|||||||||
| TRAM |
+ |
gnl|ti|1139940977 |
9e-66 |
+ |
gb|DY579224 |
5e-72 |
+ |
gb|DT615400 |
1e-58 |
| TRIF |
+ |
gnl|ti|1139933368 |
4e-07 |
ND |
? |
||||
| TBK-1 |
? |
ND |
? |
||||||
| IRF3 |
+ |
gnl|ti|1146121907 |
6e-13 |
ND |
+ |
gb|DT609518 |
2e-14 |
||
| p65 |
- |
ND |
- |
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| IFN-β |
- |
ND |
- |
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| ECSIT pathway |
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| ECSIT |
+ |
gnl|ti|1139978500 |
4e-35 |
ND |
+ |
gnl|ti|1223628732 |
2e-18 |
||
| MEKK1 |
+ |
gnl|ti|1139956887 |
2e-28 |
+ |
gb|DY581138 |
3e-83 |
+ |
gnl|ti|1226566543 |
3e-25 |
| MKKs |
+ |
gnl|ti|557758729 |
1e-14 |
ND |
+ |
gnl|ti|1121918104 |
1e-18 |
||
| JNK |
+ |
gnl|ti|1135503269 |
1e-106 |
ND |
+ |
gnl|ti|877334588 |
2e-33 |
||
| p38 |
+ |
gnl|ti|1139959014 |
1e-114 |
+ |
gb|DY579712 |
5e-111 |
+ |
gnl|ti|686048504 |
7e-39 |
| AP1 |
+ |
gnl|ti|1139792930 |
3e-10 |
+ |
gb|DY581320 |
3e-09 |
+ |
gb|CX771032 |
7e-10 |
| ATF |
+ |
gnl|ti|1139796564 |
4e-11 |
ND |
+ |
gb|CN624618 |
3e-06 |
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| Other TLR related proteins |
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| HyTRR-1 |
- |
ND |
+ |
gb|DQ449929 |
0 |
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| HyTRR-2 |
- |
ND |
+ |
gb|DQ449930 |
0 |
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| IL1-R related proteins |
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| IL1R-1 |
+ |
gnl|ti|573182253 |
0 |
ND |
- |
||||
| IL1R-2 |
+ |
gnl|ti|557993643 |
0 |
ND |
- |
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| IL1R-3 |
+ |
gnl|ti|567060226 |
0 |
ND |
- |
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| Complement system related proteins |
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| C3/A2M related |
+ |
gnl|ti|557724205 gnl|ti|559738307 gnl|ti|558391450 gnl|ti|573218050 gnl|ti|558266068 gnl|ti|573218146 gnl|ti|586367083 gnl|ti|557912603 gnl|ti|573084165 |
1e-84 |
+ |
gb|EF090257 |
1e-134 |
+ |
gb|DT618439 gb|CN554187 gb|CO376061 |
|
| C6/C7/C8 |
- |
ND |
- |
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| MAC/PF domain-containing proteins |
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| Apextrins |
- |
+ |
gb|EF091848 |
6e-15 |
+ |
gb|CV185005 gb|DT613346 gb|CF655657 gb|DT620043 |
4e-04 |
||
| Tx60-A |
+ |
gnl|ti|1139936806 gb|DY579588 |
7e-48 3e-35 |
+ |
gb|DY579588 |
9e-48 |
+ |
gb|CV464226 gb|CD680300 gb|BP512716 gb|CV464282 gb|DN246811 |
1e-07 |
| MPEG |
+ |
gnl|ti|613559286 |
5e-59 |
ND |
- |
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|
Plus or minus indicate presence or absence of genes, respectively; components marked 'ND' could not be determined within the limited available Acropora dataset; question marks indicate not resolvable Blast results, mostly within kinase domain encoding sequences. All accession numbers originated either from GenBank (gb) or from NCBI trace archive (gnl|ti). The given e-values were obtained by BlastX searches against the NCBI nr protein database. | |||||||||
Miller et al. Genome Biology 2007 8:R59 doi:10.1186/gb-2007-8-4-r59 |
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