Functional dissection of the ash2 and ash1 transcriptomes provides insights into the transcriptional basis of wing phenotypes and reveals conserved protein interactions

Additional data file 1:

Unique genes up- and downregulated over 1.5-fold (log₂ ratio = 0.58) or 2.0-fold (log₂ ratio = 1) in each mutant allele

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Additional data file 2:

Genes downregulated and upregulated over 1.5- and 2.0-fold in ash2^I1

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Additional data file 3:

Genes downregulated and upregulated over 1.5- and 2.0-fold in ash2¹¹²⁴¹¹

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Additional data file 4:

Genes downregulated and upregulated over 1.5- and 2.0-fold in ash1²²

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Additional data file 5:

GO annotations of the genes downregulated over 1.5-fold in ash2^I1

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Additional data file 6:

GO annotations of the genes upregulated over 1.5-fold in ash2^I1

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Additional data file 7:

GO annotations of the genes downregulated over 2.0-fold in ash2^I1

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Additional data file 8:

GO annotations of the genes upregulated over 2.0-fold in ash2^I1

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Additional data file 9:

GO annotations of the genes downregulated over 1.5-fold in ash2¹¹²⁴¹¹

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Additional data file 10:

GO annotations of the genes upregulated over 1.5-fold in ash2¹¹²⁴¹¹

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Additional data file 11:

GO annotations of the genes downregulated over 2.0-fold in ash2¹¹²⁴¹¹

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Additional data file 12:

GO annotations of the genes upregulated over 2.0-fold in ash2¹¹²⁴¹¹

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Additional data file 13:

GO annotations of the genes downregulated over 1.5-fold in ash1²²

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Additional data file 14:

GO annotations of the genes upregulated over 1.5-fold in ash1²²

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Additional data file 15:

GO annotations of the genes downregulated over 2.0-fold in ash1²²

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Additional data file 16:

GO annotations of the genes upregulated over 2.0-fold in ash1²²

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Additional data file 17:

GO annotations of wing disc genes identified by Klebes et al. [37]

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Additional data file 18:

Genes misregulated in ash2 and ash1 mutants preferentially expressed in the wing disc and in the prospective wing-hinge or body wall region

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Additional data file 19:

GO annotations of the genes upregulated in Sin3A deficient cells according to Pile et al. [49]

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Additional data file 20:

Genes misregulated in Sin3A deficient cells that are also misexpressed in ash2 and/or ash1 mutants

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Additional data file 21:

FDR adjusted p values for the GO terms displayed in Figure 2a

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Additional data file 22:

Distribution of regulated genes in Molecular function GO classes

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Additional data file 23:

Distribution of regulated genes in Biological process GO classes

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Additional data file 24:

ASH2, HCF and Sin3A are found in the nucleus

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