|
Results for 7-gram model using entire dataset |
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| Location |
Code |
Precision |
Sensitivity |
FPR |
Specificity |
MCC |
|
|
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| Cytoplasm |
CYT |
0.828 |
0.775 |
0.020 |
0.980 |
0.777 |
| Cytoskeleton |
CSK |
0.882 |
0.452 |
0.001 |
0.999 |
0.629 |
| Endoplasmic Reticulum |
END |
0.961 |
0.789 |
0.001 |
0.999 |
0.867 |
| Extracellular |
EXC |
0.949 |
0.939 |
0.021 |
0.979 |
0.921 |
| Golgi Apparatus |
GOL |
0.891 |
0.550 |
0.001 |
0.999 |
0.697 |
| Lysosome |
LYS |
0.953 |
0.855 |
0.000 |
1.000 |
0.902 |
| Mitochrondria |
MIT |
0.964 |
0.799 |
0.003 |
0.997 |
0.867 |
| Nuclear |
NUC |
0.807 |
0.906 |
0.048 |
0.952 |
0.821 |
| Plasma Membrane |
PLA |
0.883 |
0.958 |
0.043 |
0.957 |
0.892 |
| Perixosome |
POX |
0.938 |
0.748 |
0.000 |
1.000 |
0.836 |
|
|
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| Single-localized % overall accuracy |
89.03 |
|||||
| Multi-localized % overall accuracy (at least 1 correct) |
81.88 |
|||||
| Multi-localized % overall accuracy (both correct) |
59.70 |
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|
The performance results of ngLOC on a tenfold cross-validation are displayed. The overall accuracy is also reported for multi-localized sequences, comparing at least one localization predicted correctly against both localizations predicted correctly. FPR, false positive rate; MCC, Matthews correlation coefficient. | ||||||
King and Guda Genome Biology 2007 8:R68 doi:10.1186/gb-2007-8-5-r68 |
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