Figure 3.

Estimates of standard error do not survive quantile-quantile normalization. (a,b) <a onClick="popup('http://genomebiology.com/2007/8/5/R69/mathml/M3','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/5/R69/mathml/M3">View MathML</a> (panel a) and σ2 (panel b) before and after background correction and quantile-quantile normalization for the comparison of the Latin Square experiments 1 and 2. Fits shown are to a linear regression. (c) Box plot showing the R2 values from a linear fit for all 14 2× Latin Square comparisons.

Fodor et al. Genome Biology 2007 8:R69   doi:10.1186/gb-2007-8-5-r69
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