Table 5

In silico promoter analysis of genes differentially expressed in Nfia-/- mice

Affymetrix probe set ID

Fold change at P16

P value

Gene symbol

Number of motifs


100068_at

-3.14

0.01

Aldh1a1

3

92642_at

-1.35

0.01

Car2

1

103046_at

-1.50

0.01

Car4

1

104383_at

1.43

0.00

Crmp1

3

102307_at

1.87

0.01

Dcx

4

103438_at

-1.43

0.01

Dio2

1

98967_at

2.59

0.00

Fabp7

1

100494_at

-1.87

0.00

Fgf1

1

92940_s_at

-2.94

0.00

Gabra6

1

92939_at

-3.22

0.00

Gabra6

1

94143_at

-1.56

0.03

Gfap

3

94144_g_at

-1.71

0.01

Gfap

3

102020_at

-1.22

0.04

Kcnk3

2

102405_at

-1.52

0.01

Mag

1

96865_at

1.32

0.00

Marcks

1

160458_at

-1.33

0.01

Mcam

2

100153_at

1.29

0.02

Ncam

1

97520_s_at

1.66

0.02

Nnat

1

93081_at

1.20

0.03

Rbbp7

2

94056_at

-1.68

0.01

Scd1

3

94057_g_at

-1.70

0.02

Scd1

3

93669_f_at

2.22

0.00

Sox11

2

101631_at

1.88

0.02

Sox11

2

101993_at

1.47

0.02

Tnc

1


Selected genes dysregulated in Nfia-/- mice containing one or more conserved NFI recognition motifs within 2 kilobases upstream of their transcription start site. A complete list of all NFI motif carrying genes identified in our analysis is given in Additional data file 2. Note that some genes, such as Gabra6 and Gfap, were represented by more than one probe set on the microarray. P16, postnatal day 16.

Wong et al. Genome Biology 2007 8:R72   doi:10.1186/gb-2007-8-5-r72

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