Genome Biology

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Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors

Jason I Herschkowitz, Karl Simin, Victor J Weigman, Igor Mikaelian, Jerry Usary, Zhiyuan Hu, Karen E Rasmussen, Laundette P Jones, Shahin Assefnia, Subhashini Chandrasekharan, Michael G Backlund, Yuzhi Yin, Andrey I Khramtsov, Roy Bastein, John Quackenbush, Robert I Glazer, Powel H Brown, Jeffrey E Green, Levy Kopelovich, Priscilla A Furth, Juan P Palazzo, Olufunmilayo I Olopade, Philip S Bernard, Gary A Churchill, Terry Van Dyke and Charles M Perou*

Genome Biology 2007, 8:R76 doi:10.1186/gb-2007-8-5-r76

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Epithelial-mesenchymal transition, cancer stem cells and treatment resistance

Bhuvanesh Dave, Vivek Mittal, Nicholas M Tan, Jenny C Chang Breast Cancer Research 2011, 14:202 (19 January 2012)

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Hypoxia-inducible factor 1α promotes primary tumor growth and tumor-initiating cell activity in breast cancer

Luciana P Schwab, Danielle L Peacock, Debeshi Majumdar, Jesse F Ingels, Laura C Jensen, Keisha D Smith, Richard C Cushing, Tiffany N Seagroves Breast Cancer Research 2012, 14:R6 (7 January 2012)

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'Omic approaches to preventing or managing metastatic breast cancer

Obi L Griffith, Joe W Gray Breast Cancer Research 2011, 13:230 (8 December 2011)

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Mammary tumors that become independent of the type I insulin-like growth factor receptor express elevated levels of platelet-derived growth factor receptors

Craig I Campbell, Roger A Moorehead BMC Cancer 2011, 11:480 (9 November 2011)

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Gene expression profiles of breast biopsies from healthy women identify a group with claudin-low features

Vilde D Haakensen, Ole Lingjærde, Torben Lüders, Margit Riis, Aleix Prat, Melissa A Troester, Marit M Holmen, Jan Frantzen, Linda Romundstad, Dina Navjord, Ida K Bukholm, Tom B Johannesen, Charles M Perou, Giske Ursin, Vessela N Kristensen, Anne-Lise Børresen-Dale, Åslaug Helland BMC Medical Genomics 2011, 4:77 (1 November 2011)

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Bayesian non-negative factor analysis for reconstructing transcription factor mediated regulatory networks

Jia Meng, Jianqiu (Michelle) Zhang, Yidong Chen, Yufei Huang Proteome Science 2011, 9(Suppl 1):S9 (14 October 2011)

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Classification of microarrays; synergistic effects between normalization, gene selection and machine learning

Jenny Önskog, Eva Freyhult, Mattias Landfors, Patrik Rydén, Torgeir R Hvidsten BMC Bioinformatics 2011, 12:390 (7 October 2011)

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Cyclin D1, Id1 and EMT in breast cancer

Nicholas P Tobin, Andrew H Sims, Katja L Lundgren, Sophie Lehn, Göran Landberg BMC Cancer 2011, 11:417 (28 September 2011)

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Generation of tumor-initiating cells by exogenous delivery of OCT4 transcription factor

Adriana S Beltran, Ashley G Rivenbark, Bryan T Richardson, Xinni Yuan, Haili Quian, John P Hunt, Eric Zimmerman, Lee M Graves, Pilar Blancafort Breast Cancer Research 2011, 13:R94 (27 September 2011)

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Integrated miRNA and mRNA expression profiling of mouse mammary tumor models identifies miRNA signatures associated with mammary tumor lineage

Min Zhu, Ming Yi, Chang Hee Kim, Chuxia Deng, Yi Li, Daniel Medina, Robert M Stephens, Jeffrey E Green Genome Biology 2011, 12:R77 (16 August 2011)

Expression profiling in mouse models of mammary tumors identifies miRNA signatures particular to lineages or driver oncogenes

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Murine mammary tumor cells with a claudin-low genotype

Craig I Campbell, Devan E Thompson, Megan D Siwicky, Roger A Moorehead Cancer Cell International 2011, 11:28 (16 August 2011)

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Choosing the right cell line for breast cancer research

Deborah L Holliday, Valerie Speirs Breast Cancer Research 2011, 13:215 (12 August 2011)

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A Cross-Species Analysis of a Mouse Model of Breast Cancer-Specific Osteolysis and Human Bone Metastases Using Gene Expression Profiling

Anguraj Sadanandam, Mitsuru Futakuchi, Costas A Lyssiotis, William J Gibb, Rakesh K Singh BMC Cancer 2011, 11:304 (20 July 2011)

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Epithelial-mesenchymal transition and cancer stem cells: a dangerously dynamic duo in breast cancer progression

Caitlin D May, Nathalie Sphyris, Kurt W Evans, Steven J Werden, Wenjun Guo, Sendurai A Mani Breast Cancer Research 2011, 13:202 (8 February 2011)

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Key signaling nodes in mammary gland development and cancer: β-catenin

Angela Incassati, Anupama Chandramouli, Rachel Eelkema, Pamela Cowin Breast Cancer Research 2010, 12:213 (3 November 2010)

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Key signalling nodes in mammary gland development and cancer. The Snail1-Twist1 conspiracy in malignant breast cancer progression

Ellen Foubert, Bram De Craene, Geert Berx Breast Cancer Research 2010, 12:206 (25 June 2010)

This article is part of a collection on Key signalling nodes in...

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Breast tumors: of mice and women

Sean P McDermott, Max S Wicha Breast Cancer Research 2010, 12:108 (27 May 2010)

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Transcriptome analyses of mouse and human mammary cell subpopulations reveal multiple conserved genes and pathways

Elgene Lim, Di Wu, Bhupinder Pal, Toula Bouras, Marie-Liesse Asselin-Labat, François Vaillant, Hideo Yagita, Geoffrey J Lindeman, Gordon K Smyth, Jane E Visvader Breast Cancer Research 2010, 12:R21 (26 March 2010)

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From normal cell types to malignant phenotypes

Özden Yalcin-Ozuysal, Cathrin Brisken Breast Cancer Research 2009, 11:306 (9 November 2009)

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Genomic profiling of breast tumours in relation to BRCA abnormalities and phenotypes

Olafur Stefansson, Jon Jonasson, Oskar Johannsson, Kristrun Olafsdottir, Margret Steinarsdottir, Sigridur Valgeirsdottir, Jorunn Eyfjord Breast Cancer Research 2009, 11:R47 (9 July 2009)

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A signature-based method for indexing cell cycle phase distribution from microarray profiles

Hideaki Mizuno, Yoshito Nakanishi, Nobuya Ishii, Akinori Sarai, Kunio Kitada BMC Genomics 2009, 10:137 (30 March 2009)

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A functional Notchsurvivin gene signature in basal breast cancer

Connie W Lee, Karl Simin, Qin Liu, Janet Plescia, Minakshi Guha, Ashraf Khan, Chung-Cheng Hsieh, Dario C Altieri Breast Cancer Research 2008, 10:R97 (24 November 2008)

Notch-1-survivin functional gene signature validation as a basal breast cancer hallmark suggests novel roles for Notch and survivin antagonists as molecular therapies against this recurrence-prone disease type.

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Unlocking the power of cross-species genomic analyses: identification of evolutionarily conserved breast cancer networks and validation of preclinical models

Christina N Bennett, Jeffrey E Green Breast Cancer Research 2008, 10:213 (11 September 2008)

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The functional loss of the retinoblastoma tumour suppressor is a common event in basal-like and luminal B breast carcinomas

Jason I Herschkowitz, Xiaping He, Cheng Fan, Charles M Perou Breast Cancer Research 2008, 10:R75 (9 September 2008)

The functional loss of the retinoblastoma tumour suppressor, RB1, is common in basal-like tumours and may play a key role in their aggressive biology and unique therapeutic responses.

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Regulation of cancer stem cells by p53

D Joseph Jerry, Luwei Tao, Haoheng Yan Breast Cancer Research 2008, 10:304 (29 August 2008)

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PMC42, a breast progenitor cancer cell line, has normal-like mRNA and microRNA transcriptomes

Anna Git, Inmaculada Spiteri, Cherie Blenkiron, Mark J Dunning, Jessica CM Pole, Suet-Feung Chin, Yanzhong Wang, James Smith, Frederick J Livesey, Carlos Caldas Breast Cancer Research 2008, 10:R54 (27 June 2008)

Breast cancer cell line PMC42 is a good model for normal breast epithelium, providing a unique biological tool to study breast differentiation and the function of key miRNAs typically lost in cancer.

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Molecular analysis reveals heterogeneity of mouse mammary tumors conditionally mutant for Brca1

Mollie H Wright, Ana I Robles, Jason I Herschkowitz, Melinda G Hollingshead, Miriam R Anver, Charles M Perou, Lyuba Varticovski Molecular Cancer 2008, 7:29 (7 April 2008)

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Brca1 breast tumors contain distinct CD44+/CD24- and CD133+ cells with cancer stem cell characteristics

Mollie H Wright, Anna Calcagno, Crystal D Salcido, Marisa D Carlson, Suresh V Ambudkar, Lyuba Varticovski Breast Cancer Research 2008, 10:R10 (1 February 2008)

Brca1-deficient mouse mammary tumours harbour heterogeneous cancer stem cell populations and CD44+/24- cells also identify human breast cancer stem cells; spheroid-forming assay may allow rapid screening of tumours for stem cell enrichment.

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EGFR associated expression profiles vary with breast tumor subtype

Katherine A Hoadley, Victor J Weigman, Cheng Fan, Lynda R Sawyer, Xiaping He, Melissa A Troester, Carolyn I Sartor, Thais Rieger-House, Philip S Bernard, Lisa A Carey, Charles M Perou BMC Genomics 2007, 8:258 (31 July 2007)