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Open Access Method

Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis

Yingchun Liu1 and Markus Ringnér2*

Author Affiliations

1 Computational Biology and Biological Physics, Department of Theoretical Physics, Lund University, SE-221 85, Sweden

2 Division of Oncology, Department of Clinical Sciences, Lund University, SE-221 85, Sweden

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Genome Biology 2007, 8:R77  doi:10.1186/gb-2007-8-5-r77

Published: 11 May 2007

Additional files

Additional data file 1:

Results for all pathways for the E2F3 gene signature

Format: CSV Size: 3KB Download file

Open Data

Additional data file 2:

Results for all pathways for the Myc gene signature

Format: CSV Size: 3KB Download file

Open Data

Additional data file 3:

Results for all pathways for the Ras gene signature

Format: CSV Size: 3KB Download file

Open Data

Additional data file 4:

Results for all pathways for the Yang et al. [33] gene signature

Format: CSV Size: 3KB Download file

Open Data

Additional data file 5:

Results for all pathways for the Karlsson et al. [34] gene signature

Format: CSV Size: 3KB Download file

Open Data

Additional data file 6:

Results for all pathways for the breast cancer prognosis gene signature

Format: CSV Size: 3KB Download file

Open Data