An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
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* Corresponding author: Michał J Okoniewski mokoniewski@picr.man.ac.uk
Genome Biology 2007, 8:R79 doi:10.1186/gb-2007-8-5-r79
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BioMed Central: 9 citations
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Software
rnaSeqMap: a Bioconductor package for RNA sequencing data exploration Anna Leśniewska, Michał J Okoniewski BMC Bioinformatics 2011, 12:200 (25 May 2011) |
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Methodology article
Kevin CH Ha, Jasmin Coulombe-Huntington, Jacek Majewski BMC Genomics 2009, 10:519 (12 November 2009) |
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Methodology article
Identifying differential exon splicing using linear models and correlation coefficients Sonia H Shah, Jacqueline A Pallas BMC Bioinformatics 2009, 10:26 (20 January 2009) |
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Database
SNUGB: a versatile genome browser supporting comparative and functional fungal genomics Kyongyong Jung, Jongsun Park, Jaeyoung Choi, Bongsoo Park, Seungill Kim, Kyohun Ahn, Jaehyuk Choi, Doil Choi, Seogchan Kang, Yong-Hwan Lee BMC Genomics 2008, 9:586 (4 December 2008) |
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Software
ExonMiner: Web service for analysis of GeneChip Exon array data Kazuyuki Numata, Ryo Yoshida, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano BMC Bioinformatics 2008, 9:494 (26 November 2008) |
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Software
G Barton, J Abbott, N Chiba, DW Huang, Y Huang, M Krznaric, J Mack-Smith, A Saleem, BT Sherman, B Tiwari, C Tomlinson, T Aitman, J Darlington, L Game, MJE Sternberg, SA Butcher BMC Bioinformatics 2008, 9:493 (25 November 2008) |
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Methodology article
Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J Gaffney, Roderick V Jensen, Jacek Majewski BMC Genomics 2008, 9:529 (7 November 2008) |
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Software
easyExon – A Java-based GUI tool for processing and visualization of Affymetrix exon array data Ting-Yu Chang, Yin-Yi Li, Chih-Hung Jen, Tsun-Po Yang, Chi-Hung Lin, Ming-Ta Hsu, Hsei-Wei Wang BMC Bioinformatics 2008, 9:432 (14 October 2008) |
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Methodology article
Exon level integration of proteomics and microarray data Danny A Bitton, Michał J Okoniewski, Yvonne Connolly, Crispin J Miller BMC Bioinformatics 2008, 9:118 (25 February 2008) Combining microarray and proteomics datasets at the level of individual exons and isoforms helps to obtain higher correlation between the datasets and to account for alternative splicing.
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