Table 3

TFBSs associated with differential up-regulation of p53 target genes

Identifier

P value

Q-value

Factor name

Reference


V.P300_01

0.001

0.032

P300

[69]

V.GATA1_01

0.000

0.032

GATA-1

[40]

V.CEBPA_01

0.001

0.032

C/EBP

V.CEBP_01

0.000

0.032

C/EBP

V.AP3_Q6

0.000

0.032

AP3

V.GATA2_01

0.004

0.047

GATA-2

[70]

V.CEBPB_01

0.004

0.047

C/EBP

V.HNF4_Q6

0.004

0.048

HNF4

[71]

V.CDPCR3HD_01

0.005

0.052

CDP CR3

V.STAT6_01

0.005

0.052

STAT6

V.CEBP_Q2

0.005

0.052

C/EBP

V.STAT5A_03

0.008

0.058

STAT5A

[41]

V.MYOGENIN_Q6

0.010

0.058

myogenin

V.POU1F1_Q6

0.011

0.063

POU1F1

V.STAT_Q6

0.011

0.063

STAT

[72]

V.GEN_INI3_B

0.013

0.063

GEN_INI

V.GEN_INI_B

0.012

0.063

GEN_INI

V.CEBP_Q3

0.013

0.064

C/EBP

V.GEN_INI2_B

0.015

0.069

GEN_INI

V.TTF1_Q6

0.016

0.073

TTF-1

V.OCT_Q6

0.017

0.074

Oct

V.HMGIY_Q3

0.018

0.074

HMG IY

[73]

V.CAP_01

0.019

0.077

cap

V.MYOD_Q6

0.020

0.078

MyoD

V.FAC1_01

0.020

0.078

FALZ

V.E2A_Q2

0.021

0.078

E2A

[74]

V.GATA1_02

0.022

0.081

GATA-1

[40]

V.E2A_Q6

0.023

0.081

E2A

[74]

V.HMGIY_Q6

0.026

0.088

HMG IY

[73]

V.IRF1_Q6

0.027

0.090

IRF

V.FOXD3_01

0.030

0.094

FOXD3

V.HNF3ALPHA_Q6

0.030

0.094

HNF-3alpha

V.E47_01

0.032

0.096

E47

V.BARBIE_01

0.032

0.096

Barbie box

V.HNF3B_01

0.033

0.097

HNF-3beta

V.HOXA3_01

0.034

0.097

HOXA3

V.HNF3_Q6

0.038

0.101

HNF-3

V.STAT4_01

0.040

0.102

STAT4


Transcription factors for which common TFBS associations are found in the promoters of down-regulated E2F target genes are indicated in bold. Results are sorted by Q-value.

De Bleser et al. Genome Biology 2007 8:R83   doi:10.1186/gb-2007-8-5-r83

Open Data