Genome Biology

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Monitoring of gene knockouts: genome-wide profiling of conditionally essential genes

Lisa K Smith1, Maria J Gomez1, Konstantin Y Shatalin2, Hyunwoo Lee1* and Alexander A Neyfakh1,3

Author Affiliations

1 Center for Pharmaceutical Biotechnology, University of Illinois, Chicago, Illinois 60607, USA

2 Current address: Department of Biochemistry, New York University School of Medicine, New York, New York 10016, USA

3 Deceased (20 April 2006)

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Genome Biology 2007, 8:R87 doi:10.1186/gb-2007-8-5-r87

Published: 22 May 2007

Additional files

Additional data file 1:

Presented is a table containing microarray raw data from the aromatic amino acid selection performed with the defined library and log ratios of probes calculated with normalized signal intensities.

Format: ZIP Size: 4MB Download file

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Additional data file 2:

Presented is a table containing microarray raw data from the aromatic amino acid selection performed with the random library and log ratios of probes calculated with normalized signal intensities.

Format: ZIP Size: 4.6MB Download file

Open Data

Additional data file 3:

Presented is a table containing microarray raw data from the chloramphenicol selection performed with the defined library and log ratios of probes calculated with normalized signal intensities.

Format: ZIP Size: 4MB Download file

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Additional data file 4:

Presented is a figure illustrating the biased representation of transposon mutants in the random transposon insertion library used in this study.

Format: PDF Size: 8.9MB Download file

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Additional data file 5:

Presented is a figure showing the chromosomal location of genes identified in the aromatic amino acid selection with the defined and random library.

Format: PDF Size: 233KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional data file 6:

Presented is a figure showing optimized parameters of microarray target preparation in MGK.

Format: PDF Size: 4.3MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data