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A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database

José L Jiménez*, Björn Hegemann, James RA Hutchins, Jan-Michael Peters and Richard Durbin

Genome Biology 2007, 8:R90 doi:10.1186/gb-2007-8-5-r90

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Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

Pawel Durek, Christian Schudoma, Wolfram Weckwerth, Joachim Selbig, Dirk Walther BMC Bioinformatics 2009, 10:117 (21 April 2009)

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Proteomics studies confirm the presence of alternative protein isoforms on a large scale

Michael L Tress, Bernd Bodenmiller, Ruedi Aebersold, Alfonso Valencia Genome Biology 2008, 9:R162 (18 November 2008)

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Stably expressed alternatively-spliced protein isoforms are produced on a genome-wide scale in Drosophila.

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PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

Florian Gnad, Shubin Ren, Juergen Cox, Jesper V Olsen, Boris Macek, Mario Oroshi, Matthias Mann Genome Biology 2007, 8:R250 (26 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | Editor’s summary

PHOSIDA, a phosphorylation site database, integrates thousands of phosphosites identified by proteomics in various species.

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