Table 2

Comparison of microarray and real-time PCR performance in detection of pathogen genera (HRV, pneumovirus)
Patient ID
 Array
 WKL
 P value
 PDA genus diagnosis
 PCR diagnosis
 PCR Ct value
 Virus copy no.
111
 35915

ND
 ND

122
 35887
 20.87
 2.47 × 10-29
 Pneumovirus
 Pneumovirus
 24.8
 5.0 × 104
133
 71180
 22.33
 6.93 × 10-62
 Pneumovirus
 Pneumovirus
 25.1
 4.0 × 104
165
 66691
 16.95
 3.49 × 10-4
 Pneumovirus
 Pneumovirus
 27.9
 3.9 × 103
185*
 66696

ND
 ND

254
 70935
 25.02
 2.87 × 10-39
 Pneumovirus
 Pneumovirus
 22
 5.4 × 105
261*
 66697

ND
 ND

283*
 63781
 23.99
 2.28 × 10-25
 Pneumovirus
 HRV
 28.3
 6.1 × 104


14.07
 4.66 × 10-11
 HRV


312*
 66701

ND
 Pneumovirus†
 33.7
 44
321*
 71006

ND
 Pneumovirus†
 31.1
 340
324*
 35259
 20.61
 3.55 × 10-94
 Pneumovirus
 Pneumovirus
 21.4
 3.0 × 106
331*
 66698

ND
 HRV
 31.7
 3.6 × 103
337
 71192
 21.73
 3.49 × 10-14
 Pneumovirus
 Pneumovirus
 26.2
 1.1 × 105


8.3
 1.92 × 10-4
 HRV
 HRV
 29.1
 3.1 × 104
355
 35662
 18.00
 2.97 × 10-40
 Pneumovirus
 Pneumovirus
 20.3
 6.7 × 106
368*
 66702

ND
 ND

374
 66695

ND
 Pneumovirus
 34.1
 500
378
 70933
 13.82
 7.77 × 10-17
 Pneumovirus
 Pneumovirus
 23.9
 5.4 × 105
393*
 71189
 25.41
 1.15 × 10-18
 HRV
 HRV
 30.2
 2.1 × 105
412
 35890
 19.66
 2.42 × 10-49
 Pneumovirus
 Pneumovirus
 23.5
 6.9 × 105
414
 71025
 49.91
 1.18 × 10-65
 Pneumovirus†
 Pneumovirus†
 22.3
 3.9 × 105





HRV
 33
 2.6 × 103
461
 66699

ND
 ND

478
 71027

ND
 Pneumovirus†
 34.8
 18
483*
 36053
 12.17
 1.47 × 10-12
 Pneumovirus
 Pneumovirus
 24.8
 2.9 × 105
554
 70997
 78.55
 4.59 × 10-120
 HRV
 HRV
 23.5
 1.5 × 106
573
 66700
 38.09
 6.26 × 10-22
 HRV
 HRV
 22.2
 3.6 × 106
639*
 71182
 9.23
 7.91 × 10-6
 HRV
 ND

699
 71007

ND
 ND

769
 73067
 24.62
 3.70 × 10-52
 Pneumovirus
 Pneumovirus
 25.7
 2.5 × 104
818
 70927
 10.40
 1.63 × 10-8
 HRV
 HRV
 34.2
 1.2 × 103
832
 73068
 13.52
 4.54 × 10-6
 Pneumovirus
 Pneumovirus
 28.2
 3.1 × 103


40.43
 1.73 × 10-36
 Pneumovirus†
 Pneumovirus†
 23.8
 1.2 × 105
841
 73070
 22.11
 6.80 × 10-50
 Pneumovirus
 Pneumovirus
 20.9
 4.5 × 106






35.4
 8





HRV
 29.2
 3.3 × 104
853*
 66690

ND
 ND

859
 71188
 72.17
 1.42 × 10-128
 HRV
 HRV
 24.5
 2.8 × 106
892*
 68359
 12.43
 5.77 × 10-5
 HRV
 Pneumovirus
 34
 27





HRV
 32.3
 4.2 × 103
913
 71028
 40.67
 1.60 × 10-50
 Pneumovirus†
 Pneumovirus†
 19.1
 4.7 × 106
924*
 66703
 12.79
 2.56 × 10-6
 Pneumovirus†
 Pneumovirus†
 31.5
 250





Pneumovirus
 33.7
 630

*Hospitalized patients. †RSV A patient samples. ND, none detected.

Wong et al. Genome Biology 2007 8:R93   doi:10.1186/gb-2007-8-5-r93

Open Data