Research
Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses
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* Corresponding author: Marc S Halfon mshalfon@buffalo.edu
- † Equal contributors
1 Department of Biochemistry, State University of New York at Buffalo, Buffalo, NY 14214, USA
2 Department of Biological Sciences, State University of New York at Buffalo, Buffalo, NY 14214, USA
3 Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA
4 New York State Center of Excellence in Bioinformatics and the Life Sciences, Buffalo, NY 14203, USA
5 Department of Molecular and Cellular Biology, Roswell Park Cancer Institute, Buffalo, NY 14263, USA
Genome Biology 2007, 8:R101 doi:10.1186/gb-2007-8-6-r101
Published: 5 June 2007Additional files
Additional data file 1:
Figures S1-1 (basic properties of the CRMs), S1-2 (alternative mapping to tissues), S1-3 (distribution of intronic CRMs), and Table S1-1 (GO terms).
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Additional data file 2:
GFFv3 file giving the locations and additional information on the REDfly analysis CRMs.
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Additional data file 3:
Figures S3-1 through S3-4 and additional data.
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Additional data file 4:
Overlap of REDfly CRMs with ultra-conserved sequences.
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Additional data file 5:
Table S5-1 and Figure S5-1.
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Additional data file 6:
Differences between the original FTT and the revised FTT-Z (Figures S6-1 and S6-2) and CRM subsets with significant FTT-Z scores (Table S6-1).
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