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Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains

Laurence Rohmer1 email, Christine Fong1 email, Simone Abmayr1 email, Michael Wasnick1 email, Theodore J Larson Freeman1 email, Matthew Radey1 email, Tina Guina2 email, Kerstin Svensson3,4 email, Hillary S Hayden5 email, Michael Jacobs5 email, Larry A Gallagher1 email, Colin Manoil1 email, Robert K Ernst6 email, Becky Drees7 email, Danielle Buckley5 email, Eric Haugen5 email, Donald Bovee5 email, Yang Zhou5 email, Jean Chang5 email, Ruth Levy5 email, Regina Lim5 email, Will Gillett5 email, Don Guenthener5 email, Allison Kang5 email, Scott A Shaffer8 email, Greg Taylor8 email, Jinzhi Chen8 email, Byron Gallis8 email, David A D'Argenio7 email, Mats Forsman3 email, Maynard V Olson1,5,6 email, David R Goodlett8 email, Rajinder Kaul5,6 email, Samuel I Miller1,6,7 email and Mitchell J Brittnacher1 email

1Department of Genome Sciences, University of Washington, Campus Box 357710, 1705 NE Pacific street Seattle, Washington 98195, USA

2Department of Pediatrics, Division of Infectious Diseases, University of Washington, Campus Box 357710, 1720 NE Pacific street, Seattle, Washington 98195, USA

3NBC Analysis, Division of NBC Defence, Swedish Defence Research Agency, SE-901 82 Umeå, Sweden

4Department of Clinical Microbiology, Infectious Diseases, Umeå University, SE-901 85 Umeå, Sweden

5University of Washington Genome Center, University of Washington, Campus Box 352145, Mason Road, Seattle, Washington 98195, USA

6Department Medicine, University of Washington, Seattle, Washington 98195, USA

7Department of Microbiology, University of Washington, Box 357242, 1720 NE Pacific street, Seattle, Washington 98195, USA

8Department of Medicinal Chemistry, Box 357610, University of Washington, Seattle, Washington 98195, USA

author email corresponding author email

Genome Biology 2007, 8:R102doi:10.1186/gb-2007-8-6-r102

Published: 5 June 2007

Subject areas: Microbiology and parasitology, Genome studies, Genetics, Evolution


Additional files

Additional data file 1:

A total of 1,745 genes (functional or inactivated) were identified in Francisella tularensis subspecies novicida U112; its orthologous counterpart in the genome of Francisella tularensis subspecies tularensis Schu S4 and Francisella tularensis subspecies holarctica LVS is listed when available.

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Additional data file 2:

Eighty candidate virulence genes of Francisella tularensis subspecies novicida U112 are also present in holarctica and tularensis genomes.

Format: PDF Size: 106KB Download file

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Additional data file 3:

Provided is a list of the duplicated genes (100% identity) in the genomes of Francisella tularensis subspecies tularensis Schu S4 and Francisella tularensis subspecies holarctica LVS, and their counterpart in Francisella tularensis subspecies novicida U112.

Format: PDF Size: 47KB Download file

This file can be viewed with: Adobe Acrobat Reader


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