Table 5 |
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|
Analysis of inserted and deleted Sequence in 12 strains with respect to Rd KW20 |
||||||||||||
| Reference: Rd KW20 |
86-028 |
R2846 |
R2866 |
3655 |
PittAA |
PittEE |
PittGG |
PittHH |
PittII |
22.4-21 |
22.1-21 |
R3021 |
|
|
||||||||||||
| Number of insertions |
118 |
107 |
115 |
139 |
136 |
136 |
119 |
124 |
158 |
131 |
128 |
118 |
| Median insert length (bp) |
310 |
250 |
315 |
191 |
360 |
290 |
192 |
237 |
167 |
179 |
215 |
260 |
| Mean insert length (bp) |
2,076 |
1,199 |
2,041 |
1,248 |
1,245 |
961 |
1,419 |
1,408 |
879 |
1,274 |
959 |
1,869 |
| Max insert length (bp) |
55,275 |
13,119 |
53,044 |
15,789 |
20,222 |
9,796 |
28,306 |
32,587 |
11,085 |
14,983 |
10,810 |
58,706 |
| Total insert length (bp) |
244,946 |
128,290 |
234,704 |
173,459 |
169,310 |
130,683 |
168,840 |
174,636 |
138,906 |
166,923 |
122,721 |
220,535 |
| Number of deletions |
120 |
100 |
106 |
178 |
129 |
110 |
158 |
169 |
213 |
172 |
156 |
159 |
| Median deleted length (bp) |
276 |
268 |
359 |
274 |
288 |
264 |
195 |
205 |
246 |
317 |
357 |
340 |
| Mean deleted length (bp) |
1,254 |
1,354 |
1,128 |
900 |
1,339 |
1,340 |
816 |
874 |
708 |
990 |
898 |
938 |
| Max deleted length (bp) |
41,022 |
34,677 |
41,021 |
17,858 |
38,501 |
33,544 |
38,506 |
38,367 |
41,021 |
41,022 |
41,021 |
41,022 |
| Total deleted length (bp) |
150,491 |
135,377 |
119,612 |
160,262 |
172,723 |
147,451 |
128,936 |
147,689 |
150,857 |
170,262 |
140,021 |
149,079 |
|
|
||||||||||||
|
All results are quantified with respect to Rd KW20. |
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|
Hogg et al. Genome Biology 2007 8:R103 doi:10.1186/gb-2007-8-6-r103 |
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