Table 1

Proteins identified in early growth phase with their bioinformatic analysis and emPAI calculation

Accession no. (NCBI)

Protein

Mowse

PSortB

SignalP SP

SecP

emPAI

Protein (M%)

Species


L

SP


17984580

GTP-binding tyrosine phosphorylated protein

189

C

No

No

No

0.112

0.442

Bm

17982767

30S ribosomal protein S2

158

C

No

No

No

0.199

0.785

Bm

17983035

Glutamyl-tRNA amidotransferase, beta subunit

145

C

No

No

No

0.117

0.461

Bm

17984058

Phenylalanyl-tRNA synthetase beta subunit

141

C

No

No

No

0.079

0.311

Bm

17982501

UDP-N-acetylmurate - alanine ligase (cytoplasmic peptidoglycan synthetase

128

C

No

No

No

0.104

0.410

Bm

17984007

3-Oxoacyl-(acyl-carrier-protein) synthase 1

110

C

No

N0

No

0.186

0.733

Bm

17982216

Hypothetical cytosolic protein

109

C

No

No

Y 0.69

0.138

0.544

Bm

17982947

Methionyl-tRNA synthetase

101

C

No

YHA-LL14,15

No

0.050

0.197

Bm

17982718

Adenylate kinase

99

C

No

No

No

0.178

0.702

Bm

17984859

Glutamyl-tRNA amidotransferase, alpha subunit

87

U

No

No

No

0.178

0.702

Bm

17984546

Piperideine-6-carboxylate dehydrogenase

85

C

No

No

No

0.076

0.300

Bm

17982155

Branched chain amino acid ABC transporter, periplasmic AA binding protein

83

P

No

No

No

0.274

1.080

Bm

17982770

Ribosome recycling factor

82

C

No

No

No

0.130

0.513

Bm

17983887

Dihydroxy-acid dehydratase

80

C

No

AGA-AG20,21

No

0.074

0.292

Bm

17982681

Transcription antitermination protein nusG

77

U

No

No

No

0.186

0.733

Bm

17983656

Glucose-6-phosphate isomerase

74

U

No

No

No

0.084

0.331

Bm

17984871

Glucosamine-fructose-6-phosphate aminotransferase (isomerizing)

74

C

No

No

No

0.151

0.595

Bm

17982453

Hypothetical protein (immunoreactive 28 kDa omp)

69

P

No

AFA-QE28,29

Y 0.9

0.138

0.544

Bm

17740384

30S ribosomal protein S8

66

C

No

No

No

0.096

0.379

At

17983241

Nucleoside diphosphate kinase

64

C

No

No

No

0.156

0.615

Bm

17983005

ABC transporter ATP-binding protein

63

U

No

No

No

0.064

0.252

Bm

17982925

NAD-dependent malic enzyme, malic oxidoreductase

62

U

No

No

No

0.067

0.262

Bm

17983949

3-Deoxy-manno-oculosonate cytidylyltransferase

62

C

No

ANG-YI28,29

No

0.052

0.205

Bm

17983146

30S ribosomal protein S9

60

U

No

No

Y 0.70

0.146

0.576

Bm

17982830

Single-stranded DNA binding protein

59

U

No

No

Y 0.82

0.172

0.678

Bm

17982823

ATP-dependent Clp protease proteolytic subunit

58

C

No

No

No

0.233

0.919

Bm

17984491

Lipoprotein (ABC transporter substrate binding protein)

57

U

Yes

SHA-ED37,38

No

0.076

0.300

Bm

17982653

Methionine aminopeptidase

56

C

No

No

No

0.117

0.461

Bm

17984405

GTP-binding protein LepA

51

C

No

No

No

0.057

0.225

Bm

49238170

2-Dehydro-3-deoxyphosphooctonate aldolase

51

C

No

No

No

0.138

0.544

Bh

17982695

30S ribosomal protein S10

50

C

No

No

No

0.194

0.765

Bm

27353255

Transriptional regulatory protein

47

U

No

SHS-DR12,13

No

0.096

0.379

Bj

86284664

ABC transporter ATP-binding

42

CM

No

No

No

0.102

0.402

Re

17984791

Branched chain amino acid ABC aminotransferase

40

C

No

No

No

0.210

0.828

Bm


Cellular localizations: C, cytoplasmic; CM, cytoplasmic membrane; E, extracellular; P, periplasmic; U, unknown. SecP, SecretomeP; SP, signal peptide. Species: At, Agrobacterium tumefaciens; Ba, Brucella abortus; Bh, Bartonella henselae; Bj, Bradyrhizobium japonicum; Bm, Brucella melitensis; Bs, Brucella suis; Re, Rhizobium etli.

Graham et al. Genome Biology 2007 8:R110   doi:10.1186/gb-2007-8-6-r110

Open Data