Genome Biology

official impact factor 6.89

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Celsius: a community resource for Affymetrix microarray data

Allen Day, Marc RJ Carlson, Jun Dong, Brian D O'Connor and Stanley F Nelson*

Genome Biology 2007, 8:R112 doi:10.1186/gb-2007-8-6-r112

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BioMed Central: 9 citations

Methodology article   Open Access Highly Accessed

Construction and use of gene expression covariation matrix

Jérôme Hennetin, Petri Pehkonen, Michel Bellis BMC Bioinformatics 2009, 10:214 (13 July 2009)

Database   Open Access Highly Accessed

SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip® expression data

Adriane Menßen, Götz Edinger, Joachim R Grün, Ulrike Haase, Ria Baumgrass, Andreas Grützkau, Andreas Radbruch, Gerd-R Burmester, Thomas Häupl BMC Genomics 2009, 10:98 (5 March 2009)

Research   Open Access

Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations

Reija Autio, Sami Kilpinen, Matti Saarela, Olli Kallioniemi, Sampsa Hautaniemi, Jaakko Astola BMC Bioinformatics 2009, 10(Suppl 1):S24 (30 January 2009)

Software   Open Access

EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management

G Barton, J Abbott, N Chiba, DW Huang, Y Huang, M Krznaric, J Mack-Smith, A Saleem, BT Sherman, B Tiwari, C Tomlinson, T Aitman, J Darlington, L Game, MJE Sternberg, SA Butcher BMC Bioinformatics 2008, 9:493 (25 November 2008)

Method   Open Access Highly Accessed

Boolean implication networks derived from large scale, whole genome microarray datasets

Debashis Sahoo, David L Dill, Andrew J Gentles, Robert Tibshirani, Sylvia K Plevritis Genome Biology 2008, 9:R157 (30 October 2008)

A method for analysis of microarray data is presented that extracts statistically significant Boolean implication relationships between pairs of genes.

Research article   Open Access Highly Accessed

Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age

Yohan Lee, Adrienne C Scheck, Timothy F Cloughesy, Albert Lai, Jun Dong, Haumith K Farooqi, Linda M Liau, Steve Horvath, Paul S Mischel, Stanley F Nelson BMC Medical Genomics 2008, 1:52 (21 October 2008)

Younger patients with the most serious grade of brain tumor, glioblastoma multiforme, may survive longer because they are more likely to present with the gene signature of the proneural subtype relative to more common and aggressive forms.

Method   Open Access Highly Accessed

Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues

Sami Kilpinen, Reija Autio, Kalle Ojala, Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I Skotheim, Mari Björkman, John-Patrick Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi Genome Biology 2008, 9:R139 (19 September 2008)

A method for the comparison of mRNA expression levels of most human genes across gene expression array experiments, and a database of the results, are presented.

Database   Open Access

MiMiR – an integrated platform for microarray data sharing, mining and analysis

Chris Tomlinson, Manjula Thimma, Stelios Alexandrakis, Tito Castillo, Jayne L Dennis, Anthony Brooks, Thomas Bradley, Carly Turnbull, Ekaterini Blaveri, Geraint Barton, Norie Chiba, Klio Maratou, Pat Soutter, Tim Aitman, Laurence Game BMC Bioinformatics 2008, 9:379 (18 September 2008)

Research   Open Access

ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses

Todd H Stokes, JT Torrance, Henry Li, May D Wang BMC Bioinformatics 2008, 9(Suppl 6):S18 (28 May 2008)