Method
LongSAGE profiling of nine human embryonic stem cell lines
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* Corresponding author: Marco A Marra mmarra@bcgsc.ca
1 Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada, V5Z 1L3
2 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, British Columbia, Canada, V5Z 1L3
3 National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA
4 Wisconsin National Primate Research Centre and Department of Anatomy, School of Medicine, University of Wisconsin, Madison, Wisconsin 53715, USA
Genome Biology 2007, 8:R113 doi:10.1186/gb-2007-8-6-r113
Published: 14 June 2007Additional files
Additional data file 1:
Summary of mouse specific tag types identified.
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Additional data file 2:
Genomic mappings for 268,515 unique tag sequences found in nine independent human embryonic stem cell lines.
Format: ZIP Size: 7.6MB Download file
Additional data file 3:
Tag counts are expressed for each GO category for the top 1,000 by tag count.
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Additional data file 4:
Statistically significant differentially expressed LongSAGE tags found between embryonic stem cells and terminally differentiated tissues.
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Additional data file 5:
The 4,337 genes found in common across 8 undifferentiated human embryonic stem cell lines.
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Additional data file 6:
The 20,047 LongSAGE tags exclusively expressed in embryonic stem cell lines.
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Additional data file 7:
The 634 LongSAGE tags exclusively expressed in ESCs that uniquely map to the human genome at least 2 kb away from an annotated transcript.
Format: XLS Size: 156KB Download file
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Additional data file 8:
The 301 LongSAGE tags exclusively expressed in ESCs that uniquely map to species conserved regions of the human genome at least 2 kb away from an annotated transcript.
Format: XLS Size: 73KB Download file
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Additional data file 9:
The 52 ESC specific transcripts identified by 5' RACE.
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Additional data file 10:
RACE and qPCR primer sequences used in this study.
Format: XLS Size: 37KB Download file
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