LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs

doi:10.1186/gb-2007-8-6-r115

Genome Biology

Volume 8
Issue 6

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LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs

Zhonglin Tang¹^,2^* , Yong Li¹^,2^* , Ping Wan³^,4^* , Xiaoping Li² , Shuhong Zhao² , Bang Liu² , Bin Fan² , Mengjin Zhu² , Mei Yu² and Kui Li¹^,2

¹Department of Gene and Cell Engineering, State Key Laboratory of Animal Nutrition, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100094, PR China

²Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Education of China, Huazhong Agricultural University, Wuhan 430070, PR China

³Shanghai Huaguan Biochip Co. Ltd, Shanghai, 201203, PR China

⁴Life and Environment Science College, Shanghai Normal University, Shanghai, 200234, PR China

author email corresponding author email* Contributed equally

Genome Biology 2007, 8:R115doi:10.1186/gb-2007-8-6-r115


Published:	16 June 2007

Subject areas: Genome studies, Physiology

Additional files

Additional data file 1:

LongSAGE tags expressed differentially in Tongcheng pigs.

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Additional data file 2:

LongSAGE tags expressed differentially in Landrace pigs.

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Additional data file 3:

Genes expressed differentially between breeds at 33 dpc.

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Additional data file 4:

Genes expressed differentially between breeds at 65 dpc.

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Additional data file 5:

Genes expressed differentially between breeds at 90 dpc.

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Additional data file 6:

Cluster analysis was based on 1,400 and 1,201 transcripts differentially expressed during skeletal muscle development in Tongcheng and Landrace pigs, respectively. SAGE libraries are plotted on the x-axis, and tag abundance, plotted as a fraction of the total tags for a gene in the library in question, is shown on the y-axis. T = Tongcheng; L = Landrace; numbers 33, 65, and 90 indicate days post coitus. Eight clusters for Tongcheng pig are shown in (A1-A8). Landrace clusters are shown in (B1-B8).

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Additional data file 7:

References for the genes listed in Table 4.

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Additional data file 8:

GenBank accession numbers of the cDNA sequences obtained from GLGI experiments.

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