Table 1

Analysis of 3C data reveals significant differences between AT- and GC-rich chromatin in wild-type cells as well as significant effects of deletion of RPD3 on [k × L^-3] in GC-rich chromatin

Experiment 1

Experiment 2

Experiment 3

Average

k × L^-3

S

c

r²

k × L^-3

S

c

r²

k × L^-3

S

c

r²

k × L^-3

S

c

(M^-1 nm^-3 kb³)

(kb)

(kb)

(M^-1 nm^-3 kb³)

(kb)

(kb)

(M^-1 nm^-3 kb³)

(kb)

(kb)

(M^-1 nm^-3 kb³)

(kb)

(kb)

WT-GC

309

3.6

202

0.92

528

4.3

ND

0.71

576

4.9

171

0.96

471 ± 82

4.26 ± 0.38

190

rpd3Δ-GC

240

3.7

186

0.9

314

3.9

ND

0.83

171

3.1

155

0.94

241 ± 41

3.6 ± 0.24

171

WT-AT

1,026

4.9

ND

0.89

1,425

5.8

ND

0.64

1,256

6.2

738

0.9

1,235 ± 111

5.6 ± 0.38

738

rpd3Δ-AT

1,281

5.5

ND

0.9

1,370

5.8

ND

0.74

1,094

5.3

ND

0.82

1,248 ± 81

5.53 ± 0.15

ND

rpd3Δ-AT, AT-rich chromatin in rpd3Δ cells; rpd3Δ-GC, GC-rich chromatin in rpd3Δ cells; WT-AT, AT-rich chromatin in wild-type cells; WT-GC, GC-rich chromatin in wild-type cells.

Dekker Genome Biology 2007 8:R116   doi:10.1186/gb-2007-8-6-r116