Evolutionary history and functional implications of protein domains and their combinations in eukaryotes

doi:10.1186/gb-2007-8-6-r121

Genome Biology

Volume 8
Issue 6

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Evolutionary history and functional implications of protein domains and their combinations in eukaryotes

Masumi Itoh , Jose C Nacher , Kei-ichi Kuma , Susumu Goto and Minoru Kanehisa

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan

author email corresponding author email

Genome Biology 2007, 8:R121doi:10.1186/gb-2007-8-6-r121


Published:	25 June 2007

Subject areas: Evolution, Genome studies, Biochemistry and structural biology

Additional files

Additional data file 1:

Provided is a figure showing detailed phylogenetic relationship among 47 eukaryotes.

Format: PDF Size: 184KB Download file

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Additional data file 2:

This figure illustrates the difference in the number of combination partners among each group-specific domain in extant deuterostomes.

Format: PDF Size: 11KB Download file

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Additional data file 3:

This figure illustrates the difference in the number of combination partners among each group-specific domain in extant invertebrates.

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Additional data file 4:

This figure illustrates the difference in the number of combination partners among each group-specific domain in extant fungi.

Format: PDF Size: 13KB Download file

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Additional data file 5:

This figure illustrates the difference in the number of combination partners among each group-specific domain in extant protists.

Format: PDF Size: 11KB Download file

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Additional data file 6:

This figure illustrates the difference in the number of combination partners among each group-specific domain in extant plants.

Format: PDF Size: 8KB Download file

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Additional data file 7:

Provided are tables showing the statistics of domain assignments for eukaryotes (Supplementary Table 1) and all results of history reconstruction (Supplementary Table 2).

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This file can be viewed with: Microsoft Excel Viewer