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KEGG metabolic pathways for Saccharomyces cerevisiae and number of elementary modes for each |
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| Pathway identifier |
Pathway name |
Number of computed elementary modes |
in BlastSets |
|
|
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| sce00010 |
Glycolysis/gluconeogenesis |
163 |
112 |
| sce00020 |
Citrate cycle (TCA cycle) |
99 |
60 |
| sce00030 |
Pentose phosphate pathway |
206 |
203 |
| sce00040 |
Pentose and glucuronate interconversions |
4 |
2 |
| sce00051 |
Fructose and mannose metabolism |
12 |
11 |
| sce00052 |
Galactose metabolism |
81 |
63 |
| sce00053 |
Ascorbate and aldarate metabolism |
2 |
2 |
| sce00061 |
Fatty acid biosynthesis |
4 |
3 |
| sce00071 |
Fatty acid metabolism |
22 |
20 |
| sce00072 |
Synthesis and degradation of ketone bodies |
4 |
2 |
| sce00100 |
Biosynthesis of steroids |
6 |
5 |
| sce00120 |
Bile acid biosynthesis |
5 |
4 |
| sce00130 |
Ubiquinone biosynthesis |
4 |
1 |
| sce00190 |
Oxidative phosphorylation |
7 |
7 |
| sce00220 |
Urea cycle and metabolism of amino groups |
12 |
11 |
| sce00230 |
Purine metabolism |
350 |
346 |
| sce00240 |
Pyrimidine metabolism |
31 |
28 |
| sce00251 |
Glutamate metabolism |
40 |
38 |
| sce00252 |
Alanine and aspartate metabolism |
43 |
39 |
| sce00260 |
Glycine, serine and threonine metabolism |
102 |
94 |
| sce00271 |
Methionine metabolism |
26 |
25 |
| sce00272 |
Cysteine metabolism |
14 |
12 |
| sce00280 |
Valine, leucine and isoleucine degradation |
8 |
7 |
| sce00290 |
Valine, leucine and isoleucine biosynthesis |
12 |
11 |
| sce00300 |
Lysine biosynthesis |
5 |
4 |
| sce00310 |
Lysine degradation |
6 |
5 |
| sce00330 |
Arginine and proline metabolism |
29 |
24 |
| sce00340 |
Histidine metabolism |
5 |
4 |
| sce00350 |
Tyrosine metabolism |
11 |
8 |
| sce00360 |
Phenylalanine metabolism |
3 |
3 |
| sce00361 |
gamma-Hexachlorocyclohexane degradation |
6 |
1 |
| sce00362 |
Benzoate degradation via hydroxylation |
3 |
0 |
| sce00380 |
Tryptophan metabolism |
15 |
8 |
| sce00400 |
Phenylalanine, tyrosine and tryptophan biosynthesis |
38 |
30 |
| sce00401 |
Novobiocin biosynthesis |
6 |
2 |
| sce00410 |
beta-Alanine metabolism |
6 |
6 |
| sce00430 |
Taurine and hypotaurine metabolism |
2 |
1 |
| sce00440 |
Aminophosphonate metabolism |
5 |
3 |
| sce00450 |
Selenoamino acid metabolism |
6 |
5 |
| sce00460 |
Cyanoamino acid metabolism |
9 |
2 |
| sce00480 |
Glutathione metabolism |
5 |
4 |
| sce00500 |
Starch and sucrose metabolism |
49 |
47 |
| sce00520 |
Nucleotide sugars metabolism |
15 |
11 |
| sce00521 |
Streptomycin biosynthesis |
2 |
1 |
| sce00530 |
Aminosugars metabolism |
13 |
13 |
| sce00550 |
Peptidoglycan biosynthesis |
3 |
0 |
| sce00561 |
Glycerolipid metabolism |
7 |
4 |
| sce00562 |
Inositol phosphate metabolism |
5 |
4 |
| sce00563 |
Glycosylphosphatidylinositol (GPI)-anchor biosynthesis |
3 |
0 |
| sce00564 |
Glycerophospholipid metabolism |
28 |
25 |
| sce00590 |
Arachidonic acid metabolism |
4 |
2 |
| sce00600 |
Glycosphingolipid metabolism |
7 |
5 |
| sce00620 |
Pyruvate metabolism |
139 |
132 |
| sce00624 |
1- and 2-Methylnaphthalene degradation |
7 |
3 |
| sce00625 |
Tetrachloroethene degradation |
4 |
1 |
| sce00627 |
1,4-Dichlorobenzene degradation |
9 |
0 |
| sce00630 |
Glyoxylate and dicarboxylate metabolism |
7 |
6 |
| sce00632 |
Benzoate degradation via CoA ligation |
7 |
2 |
| sce00640 |
Propanoate metabolism |
8 |
4 |
| sce00650 |
Butanoate metabolism |
9 |
7 |
| sce00670 |
One carbon pool by folate |
13 |
12 |
| sce00680 |
Methane metabolism |
5 |
3 |
| sce00710 |
Carbon fixation |
13 |
8 |
| sce00720 |
Reductive carboxylate cycle (CO2 fixation) |
3 |
3 |
| sce00730 |
Thiamine metabolism |
2 |
0 |
| sce00740 |
Riboflavin metabolism |
3 |
2 |
| sce00750 |
Vitamin B6 metabolism |
4 |
2 |
| sce00760 |
Nicotinate and nicotinamide metabolism |
9 |
8 |
| sce00770 |
Pantothenate and CoA biosynthesis |
4 |
3 |
| sce00780 |
Biotin metabolism |
1 |
1 |
| sce00790 |
Folate biosynthesis |
17 |
6 |
| sce00860 |
Porphyrin and chlorophyll metabolism |
4 |
3 |
| sce00900 |
Terpenoid biosynthesis |
9 |
8 |
| sce00903 |
Limonene and pinene degradation |
9 |
2 |
| sce00910 |
Nitrogen metabolism |
17 |
15 |
| sce00920 |
Sulfur metabolism |
3 |
2 |
| sce00960 |
Alkaloid biosynthesis II |
3 |
3 |
| sce00970 |
Aminoacyl-tRNA biosynthesis |
20 |
15 |
| sce00980 |
Metabolism of xenobiotics by cytochrome P450 |
2 |
2 |
| sce04070 |
Phosphatidylinositol signaling system |
4 |
4 |
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The first and second columns give the identifier and the name of each KEGG metabolic pathway. For each of them, the number of elementary modes computed is indicated in the third column and the number of elementary modes entered in the BlastSets database in the fourth column. In most cases, there is a difference between these two numbers because BlastSets eliminates redundant elementary modes and the ones involving only one enzyme. | |||
Schwartz et al. Genome Biology 2007 8:R123 doi:10.1186/gb-2007-8-6-r123 |
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