Table 3 |
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|
Number of induced/repressed elementary modes in each condition |
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| Stress condition |
Number of induced or repressed elementary modes (EM1) |
Number of induced or repressed KEGG pathways (EM1) |
Number of induced or repressed elementary modes (EM2) |
Number of induced or repressed KEGG pathways (EM2) |
|
|
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| Heat shock [32], induced |
12 |
2 |
28 |
4 |
| Heat shock [32], repressed |
2 |
2 |
2 |
2 |
| NaCl [32], induced |
5 |
1 |
4 |
2 |
| Peroxide [32], induced |
16 |
10 |
3 |
2 |
| Sorbitol [32], induced |
1 |
1 |
30 |
2 |
| Acid [32], induced |
6 |
1 |
0 |
0 |
| Amino acid starvation [33], induced |
13 |
3 |
104 |
19 |
| Diamide [33], induced |
42 |
12 |
196 |
21 |
| Peroxide [33], induced |
6 |
2 |
3 |
2 |
| Heat shock [33], induced |
34 |
2 |
88 |
7 |
| Nitrogen depletion [33], induced |
2 |
2 |
13 |
6 |
| Stationary phase [33], induced |
54 |
5 |
292 |
25 |
| Variable temperature [33], induced |
20 |
3 |
57 |
7 |
| Ash [34], induced |
24 |
11 |
153 |
19 |
| Ash [34], repressed |
200 |
2 |
284 |
8 |
| Cadmium [34], induced |
1 |
1 |
19 |
5 |
| Maneb [34], induced |
17 |
11 |
193 |
21 |
| Octanol [34], induced |
5 |
2 |
12 |
6 |
| Pentachlorophenol [34], induced |
7 |
5 |
56 |
12 |
| Pentanol [34], induced |
44 |
7 |
289 |
35 |
| Pentanol [34], repressed |
184 |
2 |
166 |
7 |
| Thiuram [34], induced |
12 |
11 |
19 |
5 |
| Tetrachloro-isophthalonitrile [34], induced |
17 |
11 |
25 |
8 |
| Tetrachloro-isophthalonitrile [34], repressed |
155 |
1 |
202 |
8 |
| Zineb [34], induced |
16 |
10 |
127 |
19 |
|
|
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|
This table shows the number of elementary modes found induced or repressed in each stress condition. These include all the results given by BlastSets independently of their P value. The numbers given in the fourth column are the numbers of individual elementary modes and not the numbers of pairs. |
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|
Schwartz et al. Genome Biology 2007 8:R123 doi:10.1186/gb-2007-8-6-r123 |
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