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Suspicious regions in the human chromosome 1 alignment |
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| Species |
Aligned residues |
Residues in suspicious regions |
Suspicious regions |
Residues with high phastCons score in suspicious regions |
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|
|
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| Chimp |
211,636,048 |
(86%) |
7,722 |
(0.004%) |
103 |
174 |
(2.3%) |
| Rhesus |
198,482,753 |
(80%) |
32,789 |
(0.02%) |
358 |
214 |
(0.7%) |
| Rabbit |
87,544,213 |
(35%) |
2,053,030 |
(2.3%) |
24,210 |
24,037 |
(1.2%) |
| Mouse |
92,668,918 |
(37%) |
3,033,524 |
(3.3%) |
36,594 |
25,175 |
(0.8%) |
| Rat |
87,532,024 |
(35%) |
3,141,584 |
(3.6%) |
37,231 |
34,373 |
(1.1%) |
| Dog |
132,538,114 |
(54%) |
1,661,141 |
(1.3%) |
19,277 |
8,383 |
(0.5%) |
| Cow |
124,582,989 |
(50%) |
1,524,553 |
(1.2%) |
18,020 |
6,563 |
(0.4%) |
| Armadillo |
81,991,879 |
(33%) |
1,451,731 |
(1.8%) |
17,306 |
25,172 |
(1.7%) |
| Elephant |
88,888,989 |
(36%) |
2,047,450 |
(2.3%) |
23,089 |
30,143 |
(1.5%) |
| Tenrec |
67,619,223 |
(27%) |
2,495,171 |
(3.7%) |
26,697 |
26,611 |
(1.1%) |
| Opossum |
31,534,309 |
(13%) |
4,657,853 |
(14.8%) |
41,302 |
120,445 |
(2.6%) |
| Chicken |
9,106,790 |
(4%) |
2,363,996 |
(26.0%) |
18,397 |
235,152 |
(9.9%) |
| Frog |
5,916,044 |
(2%) |
1,432,427 |
(24.2%) |
10,947 |
219,613 |
(15.3%) |
| Tetraodon |
5,167,534 |
(2%) |
1,765,895 |
(34.2%) |
9,508 |
240,568 |
(13.6%) |
| Fugu |
4,630,234 |
(2%) |
1,167,357 |
(25.2%) |
8,437 |
169,851 |
(14.6%) |
| Zebrafish |
5,855,213 |
(2%) |
1,669,490 |
(28.5%) |
10,963 |
324,159 |
(19.4%) |
| All species |
219,711,964 |
(89%) |
21,334,060 |
(9.7%) |
185,452 |
1,127,826 |
(5.3%) |
|
Aligned portions of the 247 Mbp of human chromosome 1 with respect to each of the other 16 vertebrates. Column 2 shows the total number of residues of human chromosome 1 that are aligned to the other species, together with its percentage of 247 Mbp, the size of human chromosome 1. Column 3 shows the total number of residues that are in suspicious regions, together with its percentage of the corresponding number in column 2. The number of suspicious regions is shown in column 4. Column 5 shows the total number of residues that are in suspicious regions and have a phastCons score greater than 0.5, together with its percentage of the corresponding number in column 3. | |||||||
Prakash and Tompa Genome Biology 2007 8:R124 doi:10.1186/gb-2007-8-6-r124 |
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