Table 2 |
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|
Conserved wheat miRNA families homologous to known miRNAs from other plant species |
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|
miRNA family |
Name |
Sequence(5'-3')* |
Length (nt) |
Pri-miRNA EST no. |
Conserved in other plants† |
|||
|
|
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|
Rice |
Arabidopsis |
Maize |
Sorghum |
|||||
|
|
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|
156/157 |
TaMIR156a |
UGACAGAAGAGAGUGAGCAC |
20 |
Not found |
++ |
++ |
++ |
++ |
|
TaMIR156k |
UUGACAGAAGAGAGUGAGCA |
20 |
+ |
+ |
+ |
+ |
||
|
Ta MIR156m |
UGACAGAAGAGAGUGAGCCU |
20 |
+ |
+ |
+ |
+ |
||
|
159 |
TaMIR159a |
UUUGGAUUGAAGGGAGCUCUG |
21 |
CA731881 |
++ |
+ |
++ |
++ |
|
TaMIR159b |
UUUGGAUUGAAGGGAGCUCUU |
21 |
CA484819 CA682604 |
+ |
++ |
+ |
+ |
|
|
160 |
TaMIR160 |
UGCCUGGCUCCCUGUAUGCCA |
21 |
CJ641547 |
++ |
++ |
++ |
++ |
|
164 |
TaMIR164a |
UGGAGAAGCAGGGUACGUGCA |
21 |
CA704421 |
++ |
++ |
++ |
++ |
|
165 |
TaMIR165 |
UCGGACCAGGCUUCAUCCCC |
20 |
Not found |
+ |
|||
|
166 |
TaMIR166b |
UCGGACCAGGCUUCAUUCCC |
20 |
Not found |
++ |
++ |
++ |
++ |
|
TaMIR166g |
UCGGACCAGGCUUCAAUCCC |
20 |
++ |
++ |
++ |
++ |
||
|
167 |
TaMIR167a |
UGAAGCUGCCAGCAUGAUCUA |
21 |
CK209908 |
++ |
++ |
++ |
++ |
|
TaMIR167g |
UGAAGCUGCCAGCAUGAUCUG |
21 |
CK209889 |
++ |
++ |
++ |
++ |
|
|
TaMIR167m |
UGAAGCUGCCAGCAUGAUCUGA |
22 |
+ |
+ |
+ |
+ |
||
|
168 |
TaMIR168a |
UCGCUUGGUGCAGAUCGGGAC |
21 |
Not found |
++ |
+ |
++ |
++ |
|
TaMIR168b |
UCGCUUGGUGCAGAUCGGGAU |
21 |
+ |
+ |
+ |
+ |
||
|
169 |
TaMIR169a |
CAGCCAAGGAUGACUUGCCGA |
21 |
BJ225371 |
++ |
++ |
++ |
++ |
|
TaMIR169b |
CAGCCAAGGAUGACUUGCCGG |
21 |
++ |
++ |
++ |
++ |
||
|
TaMIR169n |
ACAGCCAAGGAUGACUUGCCG |
21 |
+ |
+ |
+ |
+ |
||
|
TaMIR169m |
UAGCCAAGGAUGACUUGCCUG |
21 |
++ |
++ |
++ |
++ |
||
|
TaMIR169o |
UAGCCAAGGAUGACUUGCCUA |
21 |
++ |
++ |
++ |
++ |
||
|
170/171 |
TaMIR171a |
UGAUUGAGCCGUGCCAAUAUC |
21 |
CD910903 |
++ |
++ |
++ |
++ |
|
TaMIR171b |
UUGAGCCGUGCCAAUAUCACG |
21 |
+ |
++ |
+ |
+ |
||
|
TaMIR171h |
GUGAGCCGAACCAAUAUCACU |
21 |
++ |
+ |
++ |
++ |
||
|
172 |
TaMIR172a |
AGAAUCUUGAUGAUGCUGCAU |
21 |
Not found |
++ |
++ |
++ |
++ |
|
TaMIR172n |
GAAUCUUGAUGAUGCUGCAU |
20 |
+ |
+ |
+ |
+ |
||
|
TaMIR172c |
UGAAUCUUGAUGAUGCUGCAU |
21 |
+ |
+ |
+ |
+ |
||
|
319 |
TaMIR319a |
UUGGACUGAAGGGUGCUCCC |
20 |
Not found |
++ |
+ |
++ |
++ |
|
TaMIR319d |
UUUGGAUUGAAGGGAGCUCU |
20 |
Not found |
|||||
|
390 |
TaMIR390 |
AAGCUCAGGAGGGAUAGCGCC |
21 |
Not found |
++ |
++ |
||
|
393 |
TaMIR393 |
UCCAAAGGGAUCGCAUUGAUC |
21 |
Not found |
++ |
++ |
++ |
++ |
|
396 |
TaMIR396a |
UUCCACAGCUUUCUUGAACUG |
21 |
Not found |
++ |
++ |
++ |
++ |
|
397 |
TaMIR397 |
UUGAGUGCAGCGUUGAUGAA |
20 |
Not found |
+ |
+ |
||
|
399 |
TaMIR399 |
UGCCAAAGGAGAAUUGCCC |
19 |
CJ666653 |
+ |
+ |
+ |
+ |
|
408 |
TaMIR408 |
CUGCACUGCCUCUUCCCUGGC |
22 |
BE419354 |
++ |
++ |
++ |
|
|
444 |
TaMIR444 |
UUGCUGCCUCAAGCUUGCUGC |
21 |
CK200584 |
++ |
|||
|
CA596074 |
||||||||
|
BE405735 |
||||||||
|
479 |
TaMIR479 |
AGUGAUAUUGGUCCGGCUCAUU |
22 |
Not found |
||||
|
|
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|
The sequences given in this table represent the longest miRNA sequences identified by cloning and 454 sequencing. *The underlined nucleotides represent the non-conserved nucleotides among wheat and other plant species. †The plus symbols indicate: ++, miRNA sequences of wheat were exactly identical to those in other species; +, miRNA sequences of wheat were conserved in other species but have variations in some nucleotide positions. |
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|
Yao et al. Genome Biology 2007 8:R96 doi:10.1186/gb-2007-8-6-r96 |
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