Table 2 |
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|
Comparison of C. jejuni, H. pylori, and E. coli protein interaction sets to an E. coli reference set containing 599 low-throughput literature-cited interactions* |
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| Reference set interologs† |
Overlap with reference set interologs |
Overlap (%) with total interactions detected for each study |
Fraction of proteins in each study with orthologs in the reference set |
|
|
|
||||
| C. jejuni |
147 |
28 (19%) |
0.24 |
7.9% |
| C. jejuni (HC) |
147 |
27 (18%) |
0.95 |
8.5% |
| H. pylori‡ |
84 |
10 (12%) |
0.70 |
7.9% |
| E. coli§ |
599 |
81 (14%) |
1.32 |
11.2% |
| E. coli¶ |
599 |
49 (8%) |
0.44 |
11.2% |
|
|
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|
*The reference set was derived from DIP [28]. †Interolog lists were generated separately for each organism based on BLASTP reciprocal best match determination of orthologs. ‡H. pylori interactions were detected by Rain et al. [11]. §E. coli interactions were predicted from Butland et al. [1]. ¶E. coli interactions were predicted from Arrifuzzaman et al. [6]. HC, high confidence set. |
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|
Parrish et al. Genome Biology 2007 8:R130 doi:10.1186/gb-2007-8-7-r130 |
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