Table 2 |
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Simulation of expected number of differentially expressed ortholog sets: ortholog overview statistics |
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Category |
Total |
Up/down |
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|
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Unique Ames mouse genes |
7,188 |
3,517/3,671 |
|
Unique Little mouse genes |
7,157 |
3,442/3,715 |
|
Unique fly genes |
10,395 |
4,951/5,444 |
|
Unique worm genes |
12,414 |
5,799/6,615 |
|
Worm-fly orthologs |
3,588 |
NA |
|
Worm-Ames orthologs |
2,469 |
NA |
|
Fly-Ames orthologs |
3,125 |
NA |
|
Fly-Little orthologs |
3,105 |
NA |
|
Worm-Little orthologs |
2,464 |
NA |
|
Worm-fly-Little orthologs |
2,152 |
NA |
|
Worm-fly-Ames orthologs |
2,323 |
NA |
|
DE unique genes, worm |
953 |
558/395 |
|
DE unique genes, fly |
1,169 |
893/276 |
|
DE genes, Ames |
1,416 |
761/655 |
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DE genes, Little |
1,042 |
575/467 |
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The number of unique genes for each dataset shows the number of remaining probe sets in each analysis following removal of non-reporting probe sets, promiscuous and orphan probe sets, and multiple probe sets that report the same gene (in each case, the most significant probe set was retained). Total orthologs: number of ortholog pairs/sets with expression data in each of the relevant datasets. Differentially expressed (DE) unique genes: number of significantly differentially expressed (at q < 0.1) unique genes in each dataset. |
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McElwee et al. Genome Biology 2007 8:R132 doi:10.1186/gb-2007-8-7-r132 |
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