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Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle

Jennifer L Shock1 email, Kael F Fischer1 email and Joseph L DeRisi1,2 email

1Department of Biochemistry and Biophysics, University of California San Francisco, 1700 4th Street, San Francisco, California 94158-2330, USA.

2Howard Hughes Medical Institute, Jones Bridge Road, Chevy Chase, Maryland 20815-6789, USA.

author email corresponding author email

Genome Biology 2007, 8:R134doi:10.1186/gb-2007-8-7-r134

Published: 7 August 2007

Subject areas: Evolution, Genome studies, Bioinformatics


Additional files

Additional data file 1:

Presented is the complete dataset containing initial ratio (A0), final ratio (B) and half-life (t1/2) as well as the asymptotic standard errors for each of these parameters.

Format: XLS Size: 2.9MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 2:

Presented is the complete dataset containing a list of oligos that did not pass the quality control filters in each stage. The specific filter or filters these oligos did not pass are listed.

Format: XLS Size: 775KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 3:

Presented is a complete list of all the significant Gene Ontology terms and associated P values found in each of the k-means clusters.

Format: XLS Size: 47KB Download file

This file can be viewed with: Microsoft Excel Viewer


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