Table 3

Major transcription factor families enriched in C. elegans neurons

Transcription factor families

Fold change



Cosmid name

Common name

Embryonic pan-neural

Larval pan-neural

Embryonic A-class

Larval A-class


Homeobox

C40H5.5

ttx-3

1.6

1.5

C33D12.1

ceh-31

1.6

D1007.1

ceh-17

1.6

K02B12.1

ceh-6

1.6

1.6

T13C5.4

3.3

1.6

T26C11.7

ceh-39

1.6

ZC64.3

ceh-18

1.6

C18B12.3

1.7

C28A5.4

ceh-43

1.7

F56A12.1

unc-39

1.8

W03A3.1

ceh-10

1.8

C10G8.6

ceh-34

1.9

C17H12.9

2

F55B12.1

ceh-24

2

ZC123.3

1.6

2

C30A5.7

unc-86

2.1

T26C11.5

ceh-41

1.6

2.1

C39E6.4

mls-2

2.3

F01D4.6

mec-3

2.6

R08B4.2

2.6

B0564.10

unc-30

2.2

2.7

W05E10.3

ceh-32

2.7

F26C11.2

unc-4

2.8

13.2

9.0

C37E2.4

ceh-36

2.9

R07B1.1

vab-15

2.9

Y54F10AM.4

ceh-44

3.3

2.1

F58E6.10

unc-42

2.4

3.8

ZC247.3

lin-11

5.2

C07E3.5

1.7

F46C8.5

ceh-14

1.7

W06A7.3

ret-1

1.8

Y113G7A.6

ttx-1

2.8

Hormone receptors

Y94H6A.1

1.5

F47C10.3

1.6

F47C10.7

1.6

F56E3.4

fax-1

1.7

H01A20.1

nhr-3

1.8

1.7

1.9

R09G11.2

nhr-1

1.7

T03G6.2

nhr-40

1.7

Y39B6A.17

nhr-95

1.6

1.7

1.8

C24G6.4

nhr-47

2

1.8

K06B4.8

2

K06B4.1

nhr-51

2.5

2.1

K06B4.2

nhr-52

2.1

F21D12.1

nhr-21

2.2

C49F5.4

2.9

F07C3.10

nhr-63

4

C06C6.4

nhr-67

1.8

C08F8.8

nhr-124

1.5

C17E7.8

nhr-116

2.3

F09C6.9

3.3

1.9

F16B4.9

1.9

F31F4.12

1.6

F41B5.9

nhr-96

2.5

1.7

F44C8.11

1.8

F44C8.9

1.7

F48G7.11

2

F59E11.8

1.8

K06B4.10

nhr-88

1.8

K08A2.5

nhr-71

1.5

K11E4.5

1.8

R07B7.15

nhr-104

1.7

R11E3.5

1.8

T07C5.4

nhr-44

3.2

T19A5.4

nhr-59

1.9

T27B7.1

nhr-115

1.7

T27B7.4

nhr-65

2.9

Y17D7A.3

1.5

Y67D8B.2

1.8

Aryl-hydrocarbon receptors

C25A1.11

aha-1

1.7

C41G7.5

ahr-1

1.7

C56C10.10

2.2

2

2.3

SMADs

F01G10.8

daf-14

1.7

F25E2.5

daf-3

1.9

F37D6.6

tag-68

2.2

2.3

2.0

HMG box

F40E10.2

sox-3

1.6

1.5

T22B7.1

egl-13

1.6

T05A7.4

hmg-11

2.3

2.1

F47G4.6

2.3

K08A8.2

sox-2

2.5

2.9

C12D12.5

4.7

Y17G7A.1

hmg-12

1.8

HLH factors

C43H6.8

hlh-15

4.4

1.6

F58A4.7

hlh-11

1.6

Y16B4A.1

unc-3

2.9

3

4.9

F48D6.3

hlh-13

3

W02C12.3

1.8


Von Stetina et al. Genome Biology 2007 8:R135   doi:10.1186/gb-2007-8-7-r135

Open Data