Table 2

Estimated genome sizes of EHEC strains

Estimated sizes (kb)


K-12*

Sakai*

O157

O26

O111

O103







In silico

Exp

In silico

Exp

#2

#3

#4

#5

#6

#7

#8

#9

#1

#2

#3

#4

#5

#6

#7

#8

#1

#2

#3

#4

#5

#6

#1

#2

#3

#4

#5

#6


I-ceuI-fragmant no.

1

2,498

2,686

3,216

3,191

ND

3,342

3,325

3,277

3,226

3,358

3,325

ND

3,185

3,386

3,345

3,414

3,571

3,513

3,630

3,374

2,941

3,044

2,912

2,898

2,884

2,814

2,911

2,959

3,291

ND

2,923

2,961

2

698

687

712

720

722

722

713

713

693

718

708

ND

777

777

782

823

751

787

782

734

824

803

808

808

803

808

889

923

941

872

883

761

3

657

649

709

707

698

679

679

657

670

679

674

ND

746

751

751

741

720

720

720

720

698

698

698

693

693

698

709

720

797

714

756

712

4

521

525

579

591

574

574

574

574

574

582

574

ND

382

382

458

382

385

385

385

537

519

519

519

519

519

519

517

517

346

521

362

514

5

131

127

144

142

144

142

179

142

142

144

144

ND

295

295

301

295

298

298

298

143

140

137

137

135

135

135

137

136

317

133

320

136

6

94

83

96

89

89

88

88

88

91

88

89

ND

97

97

96

97

97

97

97

99

92

92

92

91

86

88

98

101

97

98

97

93

7

41

41

41

41

43

42

42

42

42

42

42

ND

41

41

41

41

41

41

33

41

41

41

41

41

41

41

41

43

43

43

43

43

Chromosome total

4,640

4,797

5,498

5,480

ND

5,589

5,600

5,492

5,437

5,610

5,556

ND

5,524

5,731

5,773

5,794

5,864

5,842

5,945

5,647

5,256

5,334

5,207

5,185

5,160

5,102

5,303

5,398

5,833

ND

5,384

5,220

Plasmid no.

1

93

93

93

93

101

93

93

93

93

ND

7

85

91

98

98

98

98

137

77

205

125

81

87

155

74

ND

89

89

72

52

2

3

3

6

7

3

ND

63

65

73

49

91

107

98

77

51

47

7

ND

72

63

3

3

ND

6

4

7

68

25

78

7

7

7

5

ND

4

ND

4

7

3

8

5

5

ND

5

ND

7

ND

Plasmid total

-

-

96

96

93

93

101

93

102

99

95

ND

7

158

156

175

154

98

263

273

77

395

208

144

145

166

74

ND

160

152

72

52

Genome total

4,640

4,797

5,594

5,576

NE

5,682

5,701

5,585

5,539

5,709

5,651

ND

5,530

5,889

5,929

5,969

6,018

5,940

6,208

5,920

5,333

5,729

5,415

5,328

5,305

5,268

5,377

ND

5,993

ND

5,456

5,273


*Lengths of each band estimated from experimental data and in silico analyses are shown. ND, not detected.

Ogura et al. Genome Biology 2007 8:R138   doi:10.1186/gb-2007-8-7-r138

Open Data