Table 2

Average promoter divergence values (dSM) for HK and non-HK genes classified in different GO classes


All
 CpG+
 CpG-


GO term
 Description
 N
 dSM (HK)
 dSM (nonHK)
 N
 dSM (HK)
 dSM (nonHK)
 N
 dSM (HK)
 dSM (nonHK)
Molecular function









     GO:0000166
 Nucleotide binding
 464
 0.727
 0.699
 363
 0.732
 0.698
 101
 0.684
 0.700
     GO:0004872
 Receptor activity
 259
 0.734
 0.675
 131
 0.747
 0.656
 128
 0.655
 0.692
     GO:0004871
 Signal transducer activity
 440
 0.689
 0.658
 246
 0.692
 0.656
 194
 0.663
 0.661
     GO:0003700
 Transcription factor activity
 183
 0.673
 0.602
 113
 0.657
 0.600
 70
 0.766
 0.605
     GO:0043169
 Cation binding
 485
 0.711
 0.671
 308
 0.732
 0.670
 177
 0.582
 0.671











Biological process









     GO:0044249
 Cellular biosynthesis
 256
 0.765
 0.735
 183
 0.781
 0.729
 73
 0.629
 0.741
     GO:0045184
 Establishment of protein transport
 162
 0.720
 0.737
 138
 0.723
 0.731
 24
 0.677
 0.760
     GO:0007049
 Cell cycle
 188
 0.697
 0.706
 152
 0.703
 0.724
 36
 0.656
 0.646
     GO:0019538
 Protein metabolism
 700
 0.748
 0.703
 523
 0.755
 0.698
 177
 0.682
 0.713
     GO:0044260
 Cellular macromolecule metabolism
 761
 0.748
 0.705
 560
 0.755
 0.700
 201
 0.686
 0.713
     GO:0050874
 Organismal physiological process
 292
 0.795
 0.681
 109
 0.813
 0.675
 183
 0.756
 0.685
     GO:0009605
 Response to external stimulus
 209
 0.676
 0.711
 85
 0.758
 0.699
 124
 0.538
 0.718
     GO:0007166
 Cell surface receptor linker signal transduction
 221
 0.683
 0.626
 113
 0.659
 0.645
 108
 0.762
 0.609
     GO:0048513
 Organ development
 214
 0.677
 0.566
 103
 0.699
 0.528
 111
 0.633
 0.598
     GO:0009653
 Morphogenesis
 262
 0.679
 0.584
 132
 0.685
 0.549
 130
 0.664
 0.615
     GO:0009607
 Response to biotic stimulus
 166
 0.761
 0.723
 74
 0.783
 0.686
 92
 0.680
 0.745
     GO:0007165
 Signal transduction
 563
 0.684
 0.656
 342
 0.687
 0.668
 221
 0.666
 0.643











Cellular component









     GO:0005739
 Mitochondrion
 171
 0.785
 0.756
 148
 0.780
 0.770
 23
 0.869
 0.707
     GO:0005737
 Cytoplasm
 773
 0.756
 0.719
 579
 0.759
 0.727
 194
 0.728
 0.707
     GO:0005783
 Endoplasmic reticulum
 153
 0.791
 0.713
 112
 0.776
 0.712
 41
 0.881
 0.713
     GO:0005576
 Extracellular region
 219
 0.653
 0.621
 77
 0.718
 0.591
 142
 0.523
 0.635
     GO:0005886
 Plasma membrane
 373
 0.720
 0.661
 189
 0.735
 0.656
 184
 0.663
 0.666

Entries in bold are those that have a significantly different dSM distribution (p < 0.05). The number of genes (N) is indicated for each GO class. Results for CpG+ and CpG- genes are shown.

Farré et al. Genome Biology 2007 8:R140   doi:10.1186/gb-2007-8-7-r140

Open Data