Method
Network motif analysis of a multi-mode genetic-interaction network
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* Corresponding author: Timothy Galitski tgalitski@systemsbiology.org
1 Institute for Systems Biology, N. 34th Street, Seattle, WA 98103 USA
2 University of British Columbia, Department of Genetics, Vancouver, BC, V6T 1Z4, Canada
3 University of Washington, Departments of Management Science, Finance, and Statistics, Seattle, WA, 98195, USA
Genome Biology 2007, 8:R160 doi:10.1186/gb-2007-8-8-r160
Published: 2 August 2007Additional files
Additional data file 1:
Full collection of 3n-motifs.
Format: PDF Size: 126KB Download file
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Additional data file 2:
Network pattern structure, significance, and number of instances of each 3node network pattern found in the genetic network.
Format: XML Size: 262KB Download file
Additional data file 3:
Random distribution, parametric fit, and significance of the top 100 significant 3-node network patterns found in the genetic network.
Format: PDF Size: 8.1MB Download file
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Additional data file 4:
Full collection of 4n-motifs.
Format: PDF Size: 1.2MB Download file
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Additional data file 5:
Network pattern structure, significance, and number of instances of each 4-node network pattern found in the genetic network.
Format: XML Size: 966KB Download file
Additional data file 6:
Random distribution, parametric fit, and significance of the top 100 significant 4-node network patterns found in the genetic network.
Format: PDF Size: 8MB Download file
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Additional data file 7:
Full collection of 2nGO-motifs.
Format: PDF Size: 23KB Download file
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Additional data file 8:
Network pattern structure, significance, and number of instances of each 2nGO network pattern found in the genetic network.
Format: XML Size: 271KB Download file
Additional data file 9:
Random distribution, parametric fit, and significance of the top 100 significant 2nGO network patterns found in the genetic network.
Format: PDF Size: 7.7MB Download file
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Additional data file 10:
Full collection of 3nGO-motifs.
Format: PDF Size: 113KB Download file
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Additional data file 11:
Network pattern structure, significance, and number of instances of each 3nGO network pattern found in the genetic network.
Format: XML Size: 6.5MB Download file
Additional data file 12:
Network pattern structure, significance, and number of instances of each 3nGO network pattern found in the genetic network.
Format: XML Size: 6MB Download file
Additional data file 13:
Description of the genetic perturbations used to construct the genetic interaction network.
Format: XML Size: 1.3MB Download file
Additional data file 14:
Cytoscape attribute file containing the genetic inequality relationships for all edges of the genetic interaction network.
Format: INEQUALITIES Size: 84KB Download file
Additional data file 15:
Cytoscape network file of the genetic interaction network
Format: SIF Size: 50KB Download file
Additional data file 16:
Cytoscape network file containing a subset of the full genetic interaction network.
Format: SIF Size: 5KB Download file
Additional data file 17:
Cytoscape attribute file containing GOSlim molecular function attributes.
Format: GOSFUNCTION Size: 2KB Download file
Additional data file 18:
NetworkMotifFinder Cytoscape plugin file.
Format: JAR Size: 772KB Download file
Additional data file 19:
Software tutorial for the NetworkMotifFinder plugin.
Format: DOC Size: 292KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional data file 20:
Random distribution, parametric fit, and significance of the top 200 significant 3nGO network patterns found in the genetic network.
Format: PDF Size: 8MB Download file
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Additional data file 21:
Random distribution, parametric fit, and significance of the top 200 significant 3nGO network patterns found in the genetic network.
Format: PDF Size: 7.8MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 22:
Supplemental Figure 1: definition of the genetic interactions used in this study.
Format: PDF Size: 237KB Download file
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Additional data file 23:
Supplemental Figure 2a,b: further examples of 3n-motif subnetworks.
Format: PDF Size: 1MB Download file
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Additional data file 24:
Supplemental Figure 2c,d: further examples of 3n-motif subnetworks.
Format: PDF Size: 728KB Download file
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Additional data file 25:
Supplemental Figure 2e: further examples of 4n-motif subnetworks.
Format: PDF Size: 1004KB Download file
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