Table 1

The 50 genes targeted by the most miRNAs using PicTar target predictions

Gene symbol

No. of miRNAs targeting gene

Refseq ID

Entrez gene description


ATXN1

65

NM_000332

Ataxin 1

CPEB4

63

NM_030627

Cytoplasmic polyadenylation element binding protein 4

MECP2

62

NM_004992

Methyl cpg binding protein 2 (Rett syndrome)

OTUD4

61

NM_199324

OTU domain containing 4

OGT

60

NM_003605

O-linked N-acetylglucosamine (glcnac) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)

PURB

60

NM_033224

Purine-rich element binding protein B

EIF2C1

58

NM_012199

Eukaryotic translation initiation factor 2C, 1

CPEB2

54

NM_182485

Cytoplasmic polyadenylation element binding protein 2

PLAG1

53

NM_002655

Pleiomorphic adenoma gene 1

NOVA1

53

NM_006489

Neuro-oncological ventral antigen 1

DYRK1A

52

NM_101395

Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A

HIC2

49

NM_015094

Hypermethylated in cancer 2

RAP2C

49

NM_021183

RAP2C, member of RAS oncogene family

TRPS1

48

NM_014112

Trichorhinophalangeal syndrome I

NARG1

48

NM_057175

NMDA receptor regulated 1

NLK

47

NM_016231

Nemo like kinase

BACH2

47

NM_021813

BTB and CNC homology 1, basic leucine zipper transcription factor 2

KLF12

47

NM_007249

Kruppel-like factor 12

QKI

46

NM_206853

Quaking homolog, KH domain RNA binding (mouse)

CPEB3

46

NM_014912

Cytoplasmic polyadenylation element binding protein 3

USP6

46

NM_004505

Ubiquitin specific peptidase 6 (Tre-2 oncogene)

YTHDF3

45

NM_152758

YTH domain family, member 3

ESRRG

45

NM_206594

Estrogen-related receptor gamma

CCND2

44

NM_001759

Cyclin D2

CCNJ

44

NM_019084

Cyclin J

RSBN1

44

NM_018364

Round spermatid basic protein 1

NFAT5

44

NM_173214

Nuclear factor of activated T-cells 5, tonicity-responsive

CAMTA1

44

NM_015215

Calmodulin binding transcription activator 1

CNOT6

43

NM_015455

CCR4-NOT transcription complex, subunit 6

E2F3

43

NM_001949

E2F transcription factor 3

CHES1

43

NM_005197

Checkpoint suppressor 1

ANK2

43

NM_001148

Ankyrin 2, neuronal

MAP3K3

43

NM_002401

Mitogen-activated protein kinase kinase kinase 3

DNAJC13

42

NM_015268

Dnaj (Hsp40) homolog, subfamily C, member 13

MNT

42

NM_020310

MAX binding protein

PPARGC1A

41

NM_013261

Peroxisome proliferative activated receptor, gamma, coactivator 1, alpha

TRIM2

41

NM_015271

Tripartite motif-containing 2

ZNF238

41

NM_006352

Zinc finger protein 238

PAFAH1B1

41

NM_000430

Platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45 kDa

HMGA2

41

NM_003483

High mobility group AT-hook 2

FNDC3B

41

NM_022763

Fibronectin type III domain containing 3B

FBXO33

40

NM_203301

F-box protein 33

STC1

40

NM_003155

Stanniocalcin 1

CPD

40

NM_001304

Carboxypeptidase D

CHD9

40

NM_025134

Chromodomain helicase DNA binding protein 9

KIAA0261

40

NM_015045

Kiaa0261

RNF38

40

NM_022781

Ring finger protein 38

BAZ2A

39

NM_013449

Bromodomain adjacent to zinc finger domain, 2A

CBFA2T3

39

NM_175931

Core-binding factor, runt domain, alpha subunit 2; translocated to, 3

FNDC3A

39

NM_014923

Fibronectin type III domain containing 3A


Hon and Zhang Genome Biology 2007 8:R166   doi:10.1186/gb-2007-8-8-r166

Open Data