Table 1 |
|||
|
The 50 genes targeted by the most miRNAs using PicTar target predictions |
|||
|
Gene symbol |
No. of miRNAs targeting gene |
Refseq ID |
Entrez gene description |
|
|
|||
|
ATXN1 |
65 |
NM_000332 |
Ataxin 1 |
|
CPEB4 |
63 |
NM_030627 |
Cytoplasmic polyadenylation element binding protein 4 |
|
MECP2 |
62 |
NM_004992 |
Methyl cpg binding protein 2 (Rett syndrome) |
|
OTUD4 |
61 |
NM_199324 |
OTU domain containing 4 |
|
OGT |
60 |
NM_003605 |
O-linked N-acetylglucosamine (glcnac) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) |
|
PURB |
60 |
NM_033224 |
Purine-rich element binding protein B |
|
EIF2C1 |
58 |
NM_012199 |
Eukaryotic translation initiation factor 2C, 1 |
|
CPEB2 |
54 |
NM_182485 |
Cytoplasmic polyadenylation element binding protein 2 |
|
PLAG1 |
53 |
NM_002655 |
Pleiomorphic adenoma gene 1 |
|
NOVA1 |
53 |
NM_006489 |
Neuro-oncological ventral antigen 1 |
|
DYRK1A |
52 |
NM_101395 |
Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A |
|
HIC2 |
49 |
NM_015094 |
Hypermethylated in cancer 2 |
|
RAP2C |
49 |
NM_021183 |
RAP2C, member of RAS oncogene family |
|
TRPS1 |
48 |
NM_014112 |
Trichorhinophalangeal syndrome I |
|
NARG1 |
48 |
NM_057175 |
NMDA receptor regulated 1 |
|
NLK |
47 |
NM_016231 |
Nemo like kinase |
|
BACH2 |
47 |
NM_021813 |
BTB and CNC homology 1, basic leucine zipper transcription factor 2 |
|
KLF12 |
47 |
NM_007249 |
Kruppel-like factor 12 |
|
QKI |
46 |
NM_206853 |
Quaking homolog, KH domain RNA binding (mouse) |
|
CPEB3 |
46 |
NM_014912 |
Cytoplasmic polyadenylation element binding protein 3 |
|
USP6 |
46 |
NM_004505 |
Ubiquitin specific peptidase 6 (Tre-2 oncogene) |
|
YTHDF3 |
45 |
NM_152758 |
YTH domain family, member 3 |
|
ESRRG |
45 |
NM_206594 |
Estrogen-related receptor gamma |
|
CCND2 |
44 |
NM_001759 |
Cyclin D2 |
|
CCNJ |
44 |
NM_019084 |
Cyclin J |
|
RSBN1 |
44 |
NM_018364 |
Round spermatid basic protein 1 |
|
NFAT5 |
44 |
NM_173214 |
Nuclear factor of activated T-cells 5, tonicity-responsive |
|
CAMTA1 |
44 |
NM_015215 |
Calmodulin binding transcription activator 1 |
|
CNOT6 |
43 |
NM_015455 |
CCR4-NOT transcription complex, subunit 6 |
|
E2F3 |
43 |
NM_001949 |
E2F transcription factor 3 |
|
CHES1 |
43 |
NM_005197 |
Checkpoint suppressor 1 |
|
ANK2 |
43 |
NM_001148 |
Ankyrin 2, neuronal |
|
MAP3K3 |
43 |
NM_002401 |
Mitogen-activated protein kinase kinase kinase 3 |
|
DNAJC13 |
42 |
NM_015268 |
Dnaj (Hsp40) homolog, subfamily C, member 13 |
|
MNT |
42 |
NM_020310 |
MAX binding protein |
|
PPARGC1A |
41 |
NM_013261 |
Peroxisome proliferative activated receptor, gamma, coactivator 1, alpha |
|
TRIM2 |
41 |
NM_015271 |
Tripartite motif-containing 2 |
|
ZNF238 |
41 |
NM_006352 |
Zinc finger protein 238 |
|
PAFAH1B1 |
41 |
NM_000430 |
Platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45 kDa |
|
HMGA2 |
41 |
NM_003483 |
High mobility group AT-hook 2 |
|
FNDC3B |
41 |
NM_022763 |
Fibronectin type III domain containing 3B |
|
FBXO33 |
40 |
NM_203301 |
F-box protein 33 |
|
STC1 |
40 |
NM_003155 |
Stanniocalcin 1 |
|
CPD |
40 |
NM_001304 |
Carboxypeptidase D |
|
CHD9 |
40 |
NM_025134 |
Chromodomain helicase DNA binding protein 9 |
|
KIAA0261 |
40 |
NM_015045 |
Kiaa0261 |
|
RNF38 |
40 |
NM_022781 |
Ring finger protein 38 |
|
BAZ2A |
39 |
NM_013449 |
Bromodomain adjacent to zinc finger domain, 2A |
|
CBFA2T3 |
39 |
NM_175931 |
Core-binding factor, runt domain, alpha subunit 2; translocated to, 3 |
|
FNDC3A |
39 |
NM_014923 |
Fibronectin type III domain containing 3A |
|
|
|||
|
Hon and Zhang Genome Biology 2007 8:R166 doi:10.1186/gb-2007-8-8-r166 |
|||
