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List of manually annotated pig loci |
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| Locus name |
Locus description |
Start coordinate |
End coordinate |
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| PTPN1 |
Tyrosine phosphatase 1B |
192295 |
261948 |
| C17H20orf175 |
Orthologue of human C20orf175 |
263263 |
296984 |
| CH242-7P5.3 |
Novel transcript |
291165 |
303697 |
| PARDB6 |
Par-6 partitioning defective 6 homolog beta (Caenorhabditis elegans) |
370305 |
389059 |
| BCAS4 |
Breast carcinoma amplified sequence 4 |
414609 |
479471 |
| ADNP |
Activity-dependent neuroprotector |
492879 |
525950 |
| DPM1 |
Dolichly-phosphate mannosyltransferase polypeptide 1, catalytic subunit |
529091 |
552289 |
| MOCS3 |
Molybdenum cofactor synthesis 3 |
552563 |
554931 |
| KCNG1 |
Potassium voltage-gated channel, subfamily G, member 1 |
600472 |
620055 |
| CH242-277I8.2 |
Novel transcript |
862318 |
889344 |
| CH242-277I8.1 |
Putative novel transcript |
891646 |
892957 |
| NFATC2 |
Nuclear factor of activated T-cells |
918501 |
1065177 |
| CH242-277I8.4 |
Putative novel transcript |
1034571 |
1035756 |
| ATP9A |
Atpase, class II, type 9A |
1111110 |
1247324 |
| SALL4 |
Sal-like 4 (Drosophila) |
1257555 |
1278123 |
| CH242-209L2.2 |
Putative novel transcript |
1323104 |
1324011 |
| CH242-209L2.1 |
Pseudogene similar to part of human protein regulator of cytokinesis 1 (PRC1) |
1323229 |
1323658 |
| CH242-511J12.1 |
Ribosomal protein L27a (RPL27A) pseuodgene |
1496762 |
1497205 |
| ZFP64 |
Zinc finger protein 64 homolog (mouse) |
1577847 |
1666097 |
| CH242-300K12.1 |
Novel transcript |
1689884 |
1709546 |
| TSHZ2 |
Teashirt family zinc finger 2 |
2317086 |
2773025 |
| ZNF217 |
Zinc finger protein 217 |
2813463 |
2839285 |
| CR974566.1 |
Thioltransferase (GLRX1) pseudogene |
2937465 |
2937783 |
| CH242-271L5.2 |
Novel transcript |
3057211 |
3066632 |
| CH242-27L15.1 |
Putative novel transcript |
3077982 |
3079132 |
| BCAS1 |
Breast carcinoma amplified sequence 1 |
3128687 |
3247224 |
| CYP24A1 |
25-Hydroxyvitamin D3-24-hydroxylase |
3318523 |
3339440 |
| PFDN4 |
Prefoldin 4 |
3365055 |
3377364 |
| DOK5 |
Docking protein 5 |
3600039 |
3751783 |
| CR956648.2 |
Novel transcript |
3756050 |
3764628 |
| CR956648.3 |
Pseudogene similar to human C11orf10 |
3817744 |
3817975 |
| CBLN4 |
Cerebellin precursor |
4884433 |
4892814 |
| CR956393.1 |
Ribosomal protein L27 (RPL27) pseudogene |
4992534 |
4992878 |
| MC3R |
Melanocortin 3 receptor |
5077795 |
5078875 |
| C17H20orf108 |
Orthologue of human C20orf108 |
5151070 |
5162634 |
| STK6 |
Serine/threonine kinase 6 |
5164100 |
5183118 |
| CSTF1 |
Cleavage stimulation factor, 3' pre-RNA, subunit 1, 50 kda |
5181641 |
5193333 |
| C17H20orf32 |
Orthologue of human C20orf32 |
5200443 |
5240295 |
| CR956640.5 |
Putative novel transcript |
5224576 |
5225992 |
| C17H20orf43 |
Orthologue of human C20orf43 |
5250245 |
5294040 |
| C17H20orf105 |
Orthologue of human C20orf105 |
5271092 |
5277853 |
| C17H20orf106 |
Orthologue of human C20orf106 |
5296497 |
5298326 |
| TFAP2C |
Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) |
5374025 |
5384555 |
| CH242-255C19.2 |
Novel transcript |
5409258 |
5410949 |
| CH242-266P8.1 |
Ribosomal protein L27 (RPL27) pseudogene |
5690286 |
5690695 |
| BMP7 |
Bone morphogenetic protein 7 (osteogenic protein 1) |
5794879 |
5886410 |
| SPO11 |
SPO11 meiotic protein covalently bound to DSB-like (Saccharomyces cerevisiae) |
5940695 |
5955823 |
| RAE1 |
RAE1 RNA export 1 homolog (Schizosaccharomyces pombe) |
5961819 |
5977901 |
| RNPC1 |
RNA-binding region (RNP1, RRM) containing 1 |
5993104 |
6007945 |
| CTCFL |
CCCTC-binding factor (zinc finger protein-like) |
6070196 |
6102129 |
| CH242-37G9.1 |
Novel transcript |
6114046 |
6116136 |
| PCK1 |
Phosphoenolpyruvate carboxykinase 1 (soluble) |
6140516 |
6146484 |
| ZBP1 |
Z-DNA binding protein 1 |
6182270 |
6192447 |
| TMEPAI |
Transmembrane, prostate androgen induced RNA |
6205610 |
6260081 |
| C17H20orf85 |
Orthologue of human C20orf85 |
6580341 |
6590326 |
| C17H20orf86 |
Orthologue of human C20orf86 |
6632471 |
6641977 |
| PPP4R1L |
Protein phosphatase 4, regulatory subunit 1-like |
6644116 |
6665957 |
| RAB22A |
RAB22A, member RAS oncogene family |
6721985 |
6779521 |
| VAPB |
VAMP (vesicle-associated membrane protein)-associated protein B and C |
6800573 |
6850820 |
| STX16 |
Syntaxin 16 |
6911191 |
6939474 |
| NPEPL1 |
Aminopeptidase-like 1 |
6946539 |
6962106 |
| GNAS |
GNAS complex locus |
7056486 |
7123907 |
| TH1L |
Th1-like (Drosophila) |
7199960 |
7212384 |
| CTSZ |
Cathepsin Z |
7212382 |
7220265 |
| TUBB1 |
Tubulin, beta family 1 |
7232312 |
7239278 |
| ATP5E |
ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit |
7241534 |
7245591 |
| C17H20orf45 |
Orthologue of human C20orf45 |
7245938 |
7255973 |
| C17H20orf174 |
Orthologue of human C20orf174 |
7384250 |
7452090 |
| EDN3 |
Endothelin 3 |
7496706 |
7519565 |
| PHACTR3 |
Phosphatase and actin regulator 3 |
7697213 |
7882258 |
| SYCP2 |
Synaptonemal complex protein 2 |
7895310 |
7972154 |
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The locus name, description and relative co-ordinates within the 8 Mb region are given. Locus names denoted in bold indicate that the locus is orthologous to a known human locus. | |||
Hart et al. Genome Biology 2007 8:R168 doi:10.1186/gb-2007-8-8-r168 |
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