Additional data file 2.

Supplementary Figure 1 shows alkaline phosphatase staining and cell cycle profiles of the mutant ES cell lines analyzed. Supplementary Figure 2 contains replication timing individual profiles of all genes in each of the mutant ES cell lines analyzed. Supplementary Figure 3 shows analysis of the Mage a2 gene. Supplementary Figure 4 shows analysis of short hairpin RNA mediated knockdown of Eed in Dnmt1 mutant ES cells.

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Jørgensen et al. Genome Biology 2007 8:R169   doi:10.1186/gb-2007-8-8-r169