PyCogent: a toolkit for making sense from sequence
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* Corresponding authors: Rob Knight rob@spot.colorado.edu - Gavin A Huttley Gavin.Huttley@anu.edu.au
- † Equal contributors
Genome Biology 2007, 8:R171 doi:10.1186/gb-2007-8-8-r171
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BioMed Central: 6 citations
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Proceedings
Laurent Gautier BMC Bioinformatics 2010, 11(Suppl 12):S11 (21 December 2010) |
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Research article
Pathological rate matrices: from primates to pathogens Harold W Schranz, Von Yap, Simon Easteal, Rob Knight, Gavin A Huttley BMC Bioinformatics 2008, 9:550 (19 December 2008) |
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Research
Pitfalls of the most commonly used models of context dependent substitution Helen Lindsay, Von Yap, Hua Ying, Gavin A Huttley Biology Direct 2008, 3:52 (16 December 2008) Rate parameters in the most popular context dependent substitution model form are confounded with nucleotide composition, but this problem is absent in a less popular alternative.
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Methodology article
J Gregory Caporaso, Sandra Smit, Brett C Easton, Lawrence Hunter, Gavin A Huttley, Rob Knight BMC Evolutionary Biology 2008, 8:327 (3 December 2008) |
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Research article
Comparison of methods for estimating the nucleotide substitution matrix Maribeth Oscamou, Daniel McDonald, Von Bing Yap, Gavin A Huttley, Manuel E Lladser, Rob Knight BMC Bioinformatics 2008, 9:511 (1 December 2008) |
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Software
Micah Hamady, Jeremy Widmann, Shelley D Copley, Rob Knight Genome Biology 2008, 9:R128 (15 August 2008) MotifCluster finds related motifs in a set of sequences and clusters the sequences into families using the motifs they contain. |