PyCogent: a toolkit for making sense from sequence

Rob Knight^{* 1} , Peter Maxwell^{* 2} , Amanda Birmingham³ , Jason Carnes⁴ , J Gregory Caporaso⁵ , Brett C Easton² , Michael Eaton⁶ , Micah Hamady⁷ , Helen Lindsay² , Zongzhi Liu¹ , Catherine Lozupone¹ , Daniel McDonald⁷ , Michael Robeson⁸ , Raymond Sammut² , Sandra Smit¹ , Matthew J Wakefield^2,9 , Jeremy Widmann¹ , Shandy Wikman¹ , Stephanie Wilson⁷ , Hua Ying² and Gavin A Huttley²

¹Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado, USA

²Computational Genomics Laboratory, John Curtin School of Medical Research, The Australian National University, Canberra, Australian Capital Territory, Australia

³Thermo Fisher Scientific, Lafayette, Colorado, USA

⁴Seattle Biomedical Research Institute, Seattle, Washington, USA

⁵Department of Biochemistry and Molecular Genetics, University of Colorado Health Sciences Center, Aurora, Colorado, USA

⁶Science Applications International Corporation, Englewood, Colorado, USA

⁷Department of Computer Science, University of Colorado, Boulder, Colorado, USA

⁸Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, USA

⁹Walter and Eliza Hall Institute, Melbourne, Victoria, Australia