Table 1 |
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|
Unique protein coding sequences (CDSs) in selected fungi revealed by comparative genomic analysis |
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Unique CDSs in comparison to |
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|
|
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|
Strain |
Abbreviation |
Total CDSs |
ands |
anig |
aor |
afm |
ani |
fgra |
dmgr |
dncr |
sce |
All others |
|
|
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|
A. niger CBS 513.88* |
ands |
14,165 |
575 |
7,018 |
7,425 |
7,808 |
9,866 |
10,481 |
10,393 |
12,588 |
3,308 |
|
|
A. niger ATCC 9029 |
anig |
13,937 |
639 |
6,857 |
7,147 |
7,499 |
9,685 |
10,285 |
10,216 |
12,387 |
3,039 |
|
|
A. oryzae |
aor |
12,059 |
4,858 |
5,013 |
5,320 |
5,714 |
7,644 |
8,306 |
8,335 |
10,511 |
3,392 |
|
|
A. fumigatus |
afm |
9,923 |
3,238 |
3,273 |
3,293 |
3,691 |
5,770 |
6,259 |
6,185 |
8,370 |
2,030 |
|
|
A. nidulans |
ani |
9,541 |
3,242 |
3,224 |
3,294 |
3,321 |
5,545 |
6,038 |
6,056 |
8,084 |
2,011 |
|
|
F. graminearum |
fgra |
11,640 |
7,381 |
7,458 |
7,288 |
7,451 |
7,613 |
6,654 |
6,748 |
10,137 |
4,863 |
|
|
M. grisea |
dmgr |
11,109 |
7,525 |
7,594 |
7,477 |
7,496 |
7,637 |
6,218 |
6,551 |
9,724 |
5,327 |
|
|
N. crassa |
dncr |
10,620 |
6,973 |
7,058 |
7,036 |
6,952 |
7,183 |
5,802 |
6,070 |
9,140 |
5,027 |
|
|
S. cerevisiae |
sce |
5,863 |
4,100 |
4,149 |
4,127 |
4,073 |
4,188 |
4,118 |
4,245 |
4,149 |
3,933 |
|
|
|
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|
*As an example, 575 out of 14,165 CDSs in the strain A. niger CBS 513.88 do not have orthologs in the strain A. niger ATCC 9029; therefore, they are unique to A. niger CBS 513.88 in comparison to A. niger ATCC 9029. |
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|
Sun et al. Genome Biology 2007 8:R182 doi:10.1186/gb-2007-8-9-r182 |
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