Table 1

Unique protein coding sequences (CDSs) in selected fungi revealed by comparative genomic analysis



Unique CDSs in comparison to



Strain
 Abbreviation
 Total CDSs
 ands
 anig
 aor
 afm
 ani
 fgra
 dmgr
 dncr
 sce
 All others
A. niger CBS 513.88*
 ands
 14,165
575
 7,018
 7,425
 7,808
 9,866
 10,481
 10,393
 12,588
 3,308
A. niger ATCC 9029
 anig
 13,937
 639
6,857
 7,147
 7,499
 9,685
 10,285
 10,216
 12,387
 3,039
A. oryzae
 aor
 12,059
 4,858
 5,013
5,320
 5,714
 7,644
 8,306
 8,335
 10,511
 3,392
A. fumigatus
 afm
 9,923
 3,238
 3,273
 3,293
3,691
 5,770
 6,259
 6,185
 8,370
 2,030
A. nidulans
 ani
 9,541
 3,242
 3,224
 3,294
 3,321
5,545
 6,038
 6,056
 8,084
 2,011
F. graminearum
 fgra
 11,640
 7,381
 7,458
 7,288
 7,451
 7,613
6,654
 6,748
 10,137
 4,863
M. grisea
 dmgr
 11,109
 7,525
 7,594
 7,477
 7,496
 7,637
 6,218
6,551
 9,724
 5,327
N. crassa
 dncr
 10,620
 6,973
 7,058
 7,036
 6,952
 7,183
 5,802
 6,070
9,140
 5,027
S. cerevisiae
 sce
 5,863
 4,100
 4,149
 4,127
 4,073
 4,188
 4,118
 4,245
 4,149
3,933

*As an example, 575 out of 14,165 CDSs in the strain A. niger CBS 513.88 do not have orthologs in the strain A. niger ATCC 9029; therefore, they are unique to A. niger CBS 513.88 in comparison to A. niger ATCC 9029.

Sun et al. Genome Biology 2007 8:R182   doi:10.1186/gb-2007-8-9-r182

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