Table 1

Unique protein coding sequences (CDSs) in selected fungi revealed by comparative genomic analysis

Unique CDSs in comparison to


Strain

Abbreviation

Total CDSs

ands

anig

aor

afm

ani

fgra

dmgr

dncr

sce

All others


A. niger CBS 513.88*

ands

14,165

575

7,018

7,425

7,808

9,866

10,481

10,393

12,588

3,308

A. niger ATCC 9029

anig

13,937

639

6,857

7,147

7,499

9,685

10,285

10,216

12,387

3,039

A. oryzae

aor

12,059

4,858

5,013

5,320

5,714

7,644

8,306

8,335

10,511

3,392

A. fumigatus

afm

9,923

3,238

3,273

3,293

3,691

5,770

6,259

6,185

8,370

2,030

A. nidulans

ani

9,541

3,242

3,224

3,294

3,321

5,545

6,038

6,056

8,084

2,011

F. graminearum

fgra

11,640

7,381

7,458

7,288

7,451

7,613

6,654

6,748

10,137

4,863

M. grisea

dmgr

11,109

7,525

7,594

7,477

7,496

7,637

6,218

6,551

9,724

5,327

N. crassa

dncr

10,620

6,973

7,058

7,036

6,952

7,183

5,802

6,070

9,140

5,027

S. cerevisiae

sce

5,863

4,100

4,149

4,127

4,073

4,188

4,118

4,245

4,149

3,933


*As an example, 575 out of 14,165 CDSs in the strain A. niger CBS 513.88 do not have orthologs in the strain A. niger ATCC 9029; therefore, they are unique to A. niger CBS 513.88 in comparison to A. niger ATCC 9029.

Sun et al. Genome Biology 2007 8:R182   doi:10.1186/gb-2007-8-9-r182

Open Data