The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
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* Corresponding author: Richard A Lempicki rlempicki@mail.nih.gov
- Equal contributors
Genome Biology 2007, 8:R183 doi:10.1186/gb-2007-8-9-r183
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Jejunal gene expression patterns correlate with severity of systemic infection in chicken Dirkjan Schokker, Mari A Smits, Johanna MJ Rebel BMC Proceedings 2011, 5(Suppl 4):S4 (3 June 2011) |
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The dissection of transcriptional modules regulated by various drugs of abuse in the mouse striatum Marcin Piechota, Michal Korostynski, Wojciech Solecki, Agnieszka Gieryk, Michal Slezak, Wiktor Bilecki, Barbara Ziolkowska, Elzbieta Kostrzewa, Iwona Cymerman, Lukasz Swiech, Jacek Jaworski, Ryszard Przewlocki Genome Biology 2010, 11:R48 (4 May 2010) The transcriptional response to six commonly-abused drugs was assessed in the mouse brain revealing common modules of drug-induced genes. |
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Effect of training-sample size and classification difficulty on the accuracy of genomic predictors Vlad Popovici, Weijie Chen, Brandon D Gallas, Christos Hatzis, Weiwei Shi, Frank W Samuelson, Yuri Nikolsky, Marina Tsyganova, Alex Ishkin, Tatiana Nikolskaya, Kenneth R Hess, Vicente Valero, Daniel Booser, Mauro Delorenzi, Gabriel N Hortobagyi, Leming Shi, W Fraser Symmans, Lajos Pusztai Breast Cancer Research 2010, 12:R5 (11 January 2010) |
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Angela K Dean, Stephen E Harris, Ivo Kalajzic, Jianhua Ruan BMC Bioinformatics 2009, 10(Suppl 9):S5 (17 September 2009) |
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Impaired immune function in Gulf War Illness Toni Whistler, Mary Fletcher, William Lonergan, Xiao-R Zeng, Jin-Mann Lin, Arthur LaPerriere, Suzanne D Vernon, Nancy G Klimas BMC Medical Genomics 2009, 2:12 (5 March 2009) Patients with Gulf War Illness have altered gene expression associated with natural killer cell functions, a condition exacerbated by vigorous exercise, implying they have impaired immune function compared to healthy people.
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EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data Christoph Bock, Konstantin Halachev, Joachim Büch, Thomas Lengauer Genome Biology 2009, 10:R14 (10 February 2009) EpiGRAPH is a genome-scale data-mining software tool that enables users to identify epigenetic and gene regulatory features in large datasets of genomic regions. |
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Xinguo Li, Harry X Wu, Shannon K Dillon, Simon G Southerton BMC Genomics 2009, 10:41 (21 January 2009) |
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Fast Gene Ontology based clustering for microarray experiments Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi BioData Mining 2008, 1:11 (21 November 2008) |
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Patrick J Killion, Vishwanath R Iyer Genome Biology 2008, 9:R159 (12 November 2008) ArrayPlex is a software package that centrally provides a large number of flexible toolsets useful for functional genomics. |
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Assessment of protein set coherence using functional annotations Monica Chagoyen, Jose M Carazo, Alberto Pascual-Montano BMC Bioinformatics 2008, 9:444 (20 October 2008) A novel approach to evaluating the homogeneity of protein sets on the basis of the global similarity of their Gene Ontology functional annotations compliments methods for validating microarray clusters and protein-protein interaction networks.
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Monika Ray, Jianhua Ruan, Weixiong Zhang Genome Biology 2008, 9:R148 (8 October 2008) Analysis of microarray data reveals extensive links between Alzheimer’s disease and cardiovascular diseases. |
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Systems biology approach to identification of biomarkers for metastatic progression in cancer Andrey A Ptitsyn, Michael M Weil, Douglas H Thamm BMC Bioinformatics 2008, 9(Suppl 9):S8 (12 August 2008) |
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Gene Ontology term overlap as a measure of gene functional similarity Meeta Mistry, Paul Pavlidis BMC Bioinformatics 2008, 9:327 (4 August 2008) |