Table 3

Genes of GO category 'development' upregulated at least two-fold* in BMP2+ cells compared to control cells in seven-day-old EBs

Affymetrix ID

Gene name

Fold change


1425035_s_at

dna (cytosine-5-)-methyltransferase 3-like

14.0

1420086_x_at

fibroblast growth factor 4

9.4

1450989_at

teratocarcinoma-derived growth factor

9.0

1423477_at

zinc finger protein of the cerebellum 1

7.5

1416067_at

interferon-related developmental regulator 1

7.0

1456033_at

t-box 4

6.8

1426412_at

neurogenic differentiation 1

5.7

1418640_at

sir2 alpha

4.3

1456341_a_at

kruppel-like factor 9

4.1

1424607_a_at

xanthine dehydrogenase

3.7

1452240_at

bruno-like 4, rna binding protein (drosophila)

3.7

1452179_at

phd finger protein 17

3.6

1416455_a_at

crystallin, alpha b

3.5

1416953_at

connective tissue growth factor

3.2

1428334_at

osteopetrosis associated transmembrane protein 1

3.1

1418901_at

ccaat/enhancer binding protein (c/ebp), beta

2.8

1421151_a_at

eph receptor a2

2.8

1422556_at

guanine nucleotide binding protein, alpha 13

2.7

1434009_at

glucocorticoid receptor dna binding factor 1

2.6

1434054_at

v-maf musculoaponeurotic fibrosarcoma oncogene family, protein g (avian)

2.5

1422057_at

nodal

2.5

1436164_at

solute carrier family 30 (zinc transporter), member 1

2.5

1422033_a_at

ciliary neurotrophic factor

2.5

1449949_a_at

coxsackievirus and adenovirus receptor

2.5

1433455_at

linker of t-cell receptor pathways

2.5

1425932_a_at

cug triplet repeat, rna binding protein 1

2.4

1451383_a_at

conserved helix-loop-helix ubiquitous kinase

2.4

1455222_a_at

upstream binding protein 1

2.4

1451257_at

acyl-coa synthetase long-chain family member 6

2.4

1426858_at

inhibin beta-b

2.3

1421624_a_at

enabled homolog (drosophila)

2.3

1437540_at

mucolipin 3

2.3

1429192_at

sloan-kettering viral oncogene homolog

2.2

1452438_s_at

taf4a rna polymerase ii, tata box binding protein (tbp)-associated factor

2.2

1436907_at

neuron navigator 1

2.1

1450986_at

nucleolar protein 5

2.0

1416904_at

muscleblind-like 1 (drosophila)

2.0


*Student's t-test, p value < 0.01.

Doss et al. Genome Biology 2007 8:R184   doi:10.1186/gb-2007-8-9-r184

Open Data