Replicate applications of LeFE to the breast cancer classification dataset. Scatter plot comparing the ranks resulting from two applications of Learner of Functional Enrichment (LeFE) to the breast cancer classification dataset, with nr = 75, nc = 6, and nTree = 400. The inset represents a blowup of the top 50 categories. r denotes the Pearson's correlation coefficient of the ranks (the Spearman correlation coefficient).
Eichler et al. Genome Biology 2007 8:R187 doi:10.1186/gb-2007-8-9-r187