|
Top 20 LeFE Categories for current versus never-smokers classification |
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| Rank |
Category |
FDR |
|
|
||
| 1 |
Electron transporter activity BioCarta |
~0 |
| 1 |
Carbohydrate metabolism (GO:0005975) |
~0 |
| 1 |
Electron transport BioCarta |
~0 |
| 1 |
Glutathione metabolism GenMAPP |
~0 |
| 1 |
Pentose Phosphate Pathway BLACK |
~0 |
| 6 |
Xenobiotic metabolism (GO:0006805) |
0.016 |
| 6 |
O Glycans biosynthesis GenMAPP |
0.016 |
| 8 |
PentosePathway BLACK |
0.045 |
| 9 |
Protein amino acid O-linked glycosylation (GO:0006493) |
0.069 |
| 10 |
Pentose phosphate pathway GenMAPP |
0.094 |
| 10 |
Gamma hexachlorocyclohexane degradation GenMAPP |
0.094 |
| 12 |
Tyrosine metabolism GenMAPP |
0.097 |
| 13 |
Cysteine metabolism (GO:0006534) |
0.105 |
| 13 |
G1pPathway BLACK |
0.105 |
| 13 |
T cell differentiation (GO:0030217) |
0.105 |
| 13 |
Fatty acid metabolism BioCarta |
0.105 |
| 17 |
Retrograde vesicle-mediated transport, Golgi to ER (GO:0006890) |
0.11 |
| 18 |
Aldehyde metabolism (GO:0006081) |
0.11 |
| 19 |
Digestion (GO:0007586) |
0.114 |
| 19 |
MAP00051 Fructose and mannose metabolism GenMAPP |
0.114 |
|
FDR, false discovery rate; GO, Gene Ontology; LeFE, Learner of Functional Enrichment. | ||
Eichler et al. Genome Biology 2007 8:R187 doi:10.1186/gb-2007-8-9-r187 |
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